View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_6 (Length: 454)
Name: NF21275_low_6
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 20 - 451
Target Start/End: Original strand, 31098669 - 31099103
Alignment:
| Q |
20 |
catttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaacaaattttgataataaaaactctgtaatgtgtcatattnnnnnnn-catg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31098669 |
catttcagtcatttctcctaaaaaattctcactcgaatgttgtctctcaacaaattttgataataaaaactctgtaatgtgtcatattaaaaaaaacatg |
31098768 |
T |
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| Q |
119 |
aacttctattttccgtatgtccataaaaactagttgtcctcttgaactcatttt-tctgatgtttggagaccctctccaattaacactatcagtggatac |
217 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098769 |
aacttctgttttctgtatgtccataaaaactagttgtcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatac |
31098868 |
T |
|
| Q |
218 |
aaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgatgcttcttacatttcccccaacttttcac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
31098869 |
aaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgacgcttcttccatttcccccaacttttcac |
31098968 |
T |
|
| Q |
318 |
aaaagttagaacatattttgcgcag-aattaaatccatttacactgacagtggcattgaatatttcaaattaaaaccatacttaaaatcacatggaatat |
416 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31098969 |
aaaagttagaacatattttgcgcagaaattaaatccatttacactgacagtggcattgaatatttcaaattaaaaccatacttaaaatcacatggaatat |
31099068 |
T |
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| Q |
417 |
ctcattacaccaattccccatatattcttggacat |
451 |
Q |
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|||| ||||||| ||||||||||||||||| |||| |
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| T |
31099069 |
ctcactacaccagttccccatatattcttgaacat |
31099103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 1701880 - 1701955
Alignment:
| Q |
215 |
tacaaatattatcttgtgttcgttgatcattttactagatataaatggatttatcccctaaaaagtaaaattgatg |
290 |
Q |
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|
| T |
1701880 |
tacaaatattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatg |
1701955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 270
Target Start/End: Complemental strand, 26592636 - 26592503
Alignment:
| Q |
138 |
tccataaaaactagttgtcctcttgaactcatttt-tctgatgtttggagaccctctccaattaaca-ctatcagtggatacaaatattatcttgtgttc |
235 |
Q |
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||||||||||||| || |||||| ||||| ||||| |||||||||||| |||| || || || |||| | || | ||| || | ||| ||||||||||| |
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| T |
26592636 |
tccataaaaactaattctcctctagaacttattttctctgatgtttggggaccatcccctat-aacatccattaatggttatagatactatcttgtgttt |
26592538 |
T |
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| Q |
236 |
gttgatcattttactagatataaatggatttatcc |
270 |
Q |
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||||| || ||||||||||||| |||||||||||| |
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| T |
26592537 |
gttgaccactttactagatatacatggatttatcc |
26592503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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