View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21275_low_9 (Length: 405)
Name: NF21275_low_9
Description: NF21275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21275_low_9 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 10299123 - 10299499
Alignment:
| Q |
11 |
cagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299123 |
cagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
10299222 |
T |
|
| Q |
111 |
tgttcaaaagaatcctagaaatgtatgtatatatctataacttgttcttttcttgatttttccattcatattgagaagaaacacgaagacttatttggcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
10299223 |
tgttcaaaagaatcctagaaatgtatgtatatatctataacttgttcttttcttgatttttccattcacattgagaagaaacacgaagacttatttagcc |
10299322 |
T |
|
| Q |
211 |
tttagaaaatgaaaataagtcttcgtgttttttgattgacgacaatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtgga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299323 |
tttagaaaatgaaaataagtcttcgtgttttttgattgacgacaatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtgga |
10299422 |
T |
|
| Q |
311 |
ttttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctatagg |
387 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10299423 |
ttttgcagggaattgcaaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctatagg |
10299499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 10319555 - 10319931
Alignment:
| Q |
11 |
cagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
110 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10319555 |
cagagatgcatactagagttttaacagataatgatcagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
10319654 |
T |
|
| Q |
111 |
tgttcaaaagaatcctagaaatgtatgtatatatctataacttgttcttttcttgatttttccattcatattgagaagaaacacgaagacttatttggcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
10319655 |
tgttcaaaagaatcctagaaatgtatgtatatatctataacttgttcttttcttgatttttccattcacattgagaagaaacacgaagacttatttagcc |
10319754 |
T |
|
| Q |
211 |
tttagaaaatgaaaataagtcttcgtgttttttgattgacgacaatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtgga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10319755 |
tttagaaaatgaaaataagtcttcgtgttttttgattgacgacaatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtgga |
10319854 |
T |
|
| Q |
311 |
ttttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctatagg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10319855 |
ttttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctatagg |
10319931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Original strand, 10336671 - 10337047
Alignment:
| Q |
11 |
cagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10336671 |
cagagatgcatactagagttttaacagataatgatcagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
10336770 |
T |
|
| Q |
111 |
tgttcaaaagaatcctagaaatgtatgtatatatctataacttgttcttttcttgatttttccattcatattgagaagaaacacgaagacttatttggcc |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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|
| T |
10336771 |
tgttcgaaagaatcctagaaatgtatgtatatatctataacttgttcttttcttgatttttccattcacattgagaagaaacacgaagacttatttagcc |
10336870 |
T |
|
| Q |
211 |
tttagaaaatgaaaataagtcttcgtgttttttgattgacgacaatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtgga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10336871 |
tttagaaaatgaaaataagtcttcgtgttttttgattgacgacaatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtgga |
10336970 |
T |
|
| Q |
311 |
ttttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctatagg |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10336971 |
ttttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctatagg |
10337047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 10338441 - 10338557
Alignment:
| Q |
29 |
ttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaattgttcaaaagaatcctag |
128 |
Q |
| |
|
|||||||||| | | |||||||| ||||||||| |||| |||||||||||| |||||||||||| | ||| | ||||||||||||||||||||| || |
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|
| T |
10338441 |
ttttaacagagagtaataagtttcatatatttgcctctgttggactttgggagttcttgtcaaatgagctagcagttgaaattgttcaaaagaatccaag |
10338540 |
T |
|
| Q |
129 |
aaatgtatgtatatatc |
145 |
Q |
| |
|
||||||||||||||||| |
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| T |
10338541 |
aaatgtatgtatatatc |
10338557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 268
Target Start/End: Complemental strand, 35632876 - 35632616
Alignment:
| Q |
11 |
cagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
110 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| |||||||||| |||| |||||||||||| |||||||||||| | |||| |||||||| |
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|
| T |
35632876 |
cagagatgtttactagagttttaacagagaatgataagtttcttatatttgcgtctgttggactttgggagttcttgtcaaatgagcaagcagctgaaat |
35632777 |
T |
|
| Q |
111 |
tgttcaaaagaatcctagaaatgtatgtata------tatctataacttgttcttttcttgatttttccattcatattgagaagaaacacgaagacttat |
204 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| ||||||| || ||||| ||| ||||||| | ||| | |
|
|
| T |
35632776 |
tgttcaaaagaatccaagaaatgtatgtatatatccatatctatgacttgttcttttcttggtttttccttttgtattgtgaaaaaacacg--ggcttgt |
35632679 |
T |
|
| Q |
205 |
ttggcctttagaaaatgaaaataagtcttcgtgttttttgattgacgac-aatttgagtctttac |
268 |
Q |
| |
|
|| | ||| ||||||||||||||| ||| ||||||||| || || ||| ||||||||||||||| |
|
|
| T |
35632678 |
ttagtcttaagaaaatgaaaataattct--gtgtttttttatcgatgacgaatttgagtctttac |
35632616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 35629722 - 35629386
Alignment:
| Q |
11 |
cagagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaat |
110 |
Q |
| |
|
||||||||| |||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||| || |||| | |||||| |
|
|
| T |
35629722 |
cagagatgcgtactagagttttaacatatagtgacaagtttcttatatttgcttctgatggactttgggatttcttgtcaaatgaacaagcagttgaaat |
35629623 |
T |
|
| Q |
111 |
tgttcaaaagaatcctagaaatgtatgtatata--------tctataacttgttcttttcttgatttttccattcatattgagaagaaacacgaagactt |
202 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||| ||||| |||| ||||||||||| ||||||| ||||| ||| |
|
|
| T |
35629622 |
tgttcaaaacaatccaagaaatgtaagtatatatatcgatttctatgactttttcttttcttggtttttcctttcattttg------------------- |
35629542 |
T |
|
| Q |
203 |
atttggcctttagaaaatgaaaataagtcttcgtgttttttg-attgacgac-aatttgagtctttacagttatatttgcaggcttttaatttaat--ta |
298 |
Q |
| |
|
|||| | ||||| ||||||||||||||| || |||||||||| || | ||| |||||||||| |||| ||||| ||||| ||||||| ||||| | || |
|
|
| T |
35629541 |
atttagtctttataaaatgaaaataagtatttgtgttttttgcatcaaagacgaatttgagtcattaccgttatgtttgctggcttttgatttagttata |
35629442 |
T |
|
| Q |
299 |
ttctgtggtggattttgcagggaattgcgaaaaggcttctgagtaccgctctagcg |
354 |
Q |
| |
|
| || ||||||||||||||||||||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
35629441 |
tgctttggtggattttgcagggaattgcaaaaaggcttgtgagtactgttctagcg |
35629386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 13 - 184
Target Start/End: Complemental strand, 35636136 - 35635959
Alignment:
| Q |
13 |
gagatgcatactagagttttaacagataatgataagtttattatatttgcttctgatggactttgggatttcttgtcaaataaaaaagctgctgaaattg |
112 |
Q |
| |
|
||||||| | |||||| ||||||||| || ||||||||| | ||||||||||||||||||||||||||||||||||||||| || |||| | |||||||| |
|
|
| T |
35636136 |
gagatgcgttctagagatttaacagagaacgataagtttctgatatttgcttctgatggactttgggatttcttgtcaaatgaacaagcagttgaaattg |
35636037 |
T |
|
| Q |
113 |
ttcaaaagaatcctagaaatgtatgtatata------tctataacttgttcttttcttgatttttccattcatattga |
184 |
Q |
| |
|
||||||| ||| | |||||| ||||| |||| ||||| |||| |||||||||| |||||||| ||||| |||| |
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|
| T |
35636036 |
ttcaaaacaattcaagaaatatatgtgtatatcgatttctatgactttttcttttctttatttttcctttcattttga |
35635959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 353
Target Start/End: Complemental strand, 35635906 - 35635807
Alignment:
| Q |
254 |
aatttgagtctttacagttatatttgcaggcttttaatttaattattctgtggtggattttgcagggaattgcgaaaaggcttctgagtaccgctctagc |
353 |
Q |
| |
|
|||||||||| |||| ||||| ||||| ||||||| ||||| |||| || ||||| |||| ||||||||||| ||||||||| ||||||| | |||||| |
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|
| T |
35635906 |
aatttgagtcattactgttatgtttgctggcttttgatttagttatgctatggtgattttttcagggaattgcaaaaaggcttgtgagtactgttctagc |
35635807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 35632596 - 35632520
Alignment:
| Q |
309 |
gattttgcagggaattgcgaaaaggcttctgagtaccgctctagcggtagctgctaaaagaaggaaggttacctata |
385 |
Q |
| |
|
||||||||||||| |||| ||||||||||||| | | |||||||| | |||||| || ||||| || |||||||||| |
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|
| T |
35632596 |
gattttgcagggagttgcaaaaaggcttctgaattctgctctagctgaagctgccaacagaagaaatgttacctata |
35632520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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