View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_high_29 (Length: 250)
Name: NF21276_high_29
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 103 - 241
Target Start/End: Original strand, 9370743 - 9370879
Alignment:
| Q |
103 |
gtcattggttttgaaacctgcacttgcactgcatataagaaaataaccatgtcaacctcacctaatcatttccttatattatcgtattcacaattttcct |
202 |
Q |
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| T |
9370743 |
gtcattggttttgaaccctgcac--gcactgcatataagaaaataaccatgtcaacctcacctaatcatttccttatattatcttaatcacaattttcct |
9370840 |
T |
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| Q |
203 |
tacttgcggtgataaatctgatccaaacagtagtataat |
241 |
Q |
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| T |
9370841 |
tacttgcggtgataaatctgatccaaacagtagtataat |
9370879 |
T |
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Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 9370461 - 9370554
Alignment:
| Q |
8 |
gctataagttcgttgagtgatcttaccactagcttataagctatcctcaatattctctcaaaagttgcaattcttatacgattttggtgtttttc |
102 |
Q |
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|||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9370461 |
gctataagttcgttcagtgatcttaccactaacttataag-tatcctcaatattctctcaaaagttgcaattcttatacgattttggtgtttttc |
9370554 |
T |
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