View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_high_5 (Length: 572)
Name: NF21276_high_5
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 8085666 - 8085933
Alignment:
| Q |
1 |
tatgtagtagacctcgcctatattattggtgagtcaaagaaccactatatcaaatataaaaagaacgttcatttacacggtttagaagatcactgtatga |
100 |
Q |
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| T |
8085666 |
tatgtagtagacctcacctatattattggtgagtcaaagaaccactatatcaaatataaaaagaacgttcatttacacggtttagaagatcactgaatga |
8085765 |
T |
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| Q |
101 |
ttattaacttggtcatggtttcaatataagattatgatgttttttattgataaaactatcacctacgatatattaattgcagtaccatattgaatatatt |
200 |
Q |
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| T |
8085766 |
ttattaacttggtcatggtttcaatataagattatgatgttttttattgataaaactatcacctactatatattaattgcagtaccatattgaatatatt |
8085865 |
T |
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| Q |
201 |
aaaataaaaagtagtgtaatgcaagaaaacccaaagaaacaaccatgtgtccaacaacgattatctca |
268 |
Q |
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| T |
8085866 |
aaaataaaaagtagtgtaatgcaagaaaacccaaagaaacaaccatgtgtacaacaacgattatctca |
8085933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 322 - 563
Target Start/End: Original strand, 8085987 - 8086226
Alignment:
| Q |
322 |
gtagtgtaatgcaagaagaaaacaatcacttatctgaacaccttcgtcatccatcactttgatcaccattgacaacaattccaaccaccactgatta-ta |
420 |
Q |
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| T |
8085987 |
gtagtgtaatgcaagaa---aacaatcacttatctgaacaccttcgtcatccatcactttgatcaccattgacaacaattccaaccaccactgattacta |
8086083 |
T |
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| Q |
421 |
ttatgaccaaaactctagccgcctctcacccccacttaatttgatctccattggctaccactcagttggctaccatcaaccaccactgatcgccactcta |
520 |
Q |
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| T |
8086084 |
ttatgaccaaaactctagccgcctctcacccccacttaatttgatctccattggctaccactcagttggctaccaccaaccaccactgatcgccactcta |
8086183 |
T |
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| Q |
521 |
acaatcgccggtgattaacaatttagcaaaaccatgagtatta |
563 |
Q |
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| T |
8086184 |
gcaatcgccggtgattaacaatttagcaaaaccatgagtatta |
8086226 |
T |
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