View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21276_high_7 (Length: 537)
Name: NF21276_high_7
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 8 - 306
Target Start/End: Original strand, 29798874 - 29799175
Alignment:
| Q |
8 |
agattatactcagaatcatcattgaaagtgttgttgaggatttcagaa---gaacccaaagaagccaaagggtcgttgatttgagaagaatcagggttga |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29798874 |
agatcatactcagaatcatcattgaaagtgttgttgaggatttcagaagaagaacccaaagaagccaaagggtcgttgatttgagaagaatcagggttga |
29798973 |
T |
|
| Q |
105 |
gttcagtgagcatggtttgaacccatgaatatagatcggttgggtcatagtgaacagtatcagaagaaagatgattgataccttcttcttgagcactacc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29798974 |
gttcagtgagcatggtttgaacccatgaatatagatcggttgggtcatagtgaacagtatcagaagaaagatgattgataccttcttcttgagcactacc |
29799073 |
T |
|
| Q |
205 |
cataaccatctcaagctgttcaagcttttgagctacatcagccatgtcggaagagcgaaccttgtaacctaatgctgctaacaactcgtccattccacca |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29799074 |
cataaccatctcaagctgttcaagcttttgagctacatcagccatgtcggaagagcgaaccttgtaacctaatgctgctaacaactcgtccattccacca |
29799173 |
T |
|
| Q |
305 |
cc |
306 |
Q |
| |
|
|| |
|
|
| T |
29799174 |
cc |
29799175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 431 - 518
Target Start/End: Original strand, 29799300 - 29799386
Alignment:
| Q |
431 |
ctaatcacacccccaccaaaactttcttggtgttctctcttcannnnnnnnnnnctttctataatttgttgattaaattggtgaagtg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
29799300 |
ctaatcacacccccaccaaaactttcttggtgttctctcttca-ttttttttttctttctataatttgttgattaaattggtgaagtg |
29799386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 5456734 - 5456805
Alignment:
| Q |
66 |
aagccaaagggtcgttgatttgagaagaatcagggttgagttcagtgagcatggtttgaacccatgaatatagat |
140 |
Q |
| |
|
|||| ||||||||| ||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
5456734 |
aagctaaagggtcgatgatttgagaa---tcaaggttgaatttagtgagcatggtttgaacccatgaatatagat |
5456805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 306
Target Start/End: Original strand, 29234984 - 29235030
Alignment:
| Q |
260 |
cgaaccttgtaacctaatgctgctaacaactcgtccattccaccacc |
306 |
Q |
| |
|
|||||||||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
29234984 |
cgaaccttgtaacctaatactgccagtaactcgtccattccaccacc |
29235030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University