View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_1 (Length: 791)

Name: NF21276_low_1
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_1
NF21276_low_1
[»] chr1 (8 HSPs)
chr1 (87-353)||(38015464-38015730)
chr1 (663-777)||(50857670-50857783)
chr1 (663-770)||(13444217-13444324)
chr1 (663-731)||(13441860-13441928)
chr1 (725-777)||(42071546-42071598)
chr1 (711-772)||(8931022-8931083)
chr1 (663-707)||(31915338-31915382)
chr1 (676-707)||(43681261-43681292)
[»] chr7 (9 HSPs)
chr7 (663-772)||(859386-859495)
chr7 (663-772)||(1220663-1220772)
chr7 (663-772)||(1217390-1217499)
chr7 (663-777)||(13886412-13886526)
chr7 (663-777)||(13882910-13883022)
chr7 (671-777)||(4300314-4300420)
chr7 (663-708)||(4888947-4888992)
chr7 (671-708)||(4303215-4303252)
chr7 (663-700)||(29175573-29175610)
[»] chr2 (12 HSPs)
chr2 (662-777)||(15129167-15129282)
chr2 (671-777)||(27952550-27952656)
chr2 (671-777)||(27956386-27956492)
chr2 (671-773)||(31636093-31636195)
chr2 (663-777)||(33655376-33655490)
chr2 (663-772)||(22011182-22011291)
chr2 (693-772)||(31633884-31633963)
chr2 (662-777)||(22264185-22264299)
chr2 (663-777)||(35682004-35682117)
chr2 (711-772)||(2155765-2155826)
chr2 (725-773)||(8781323-8781371)
chr2 (711-772)||(2165721-2165782)
[»] chr3 (9 HSPs)
chr3 (663-777)||(43304183-43304297)
chr3 (663-772)||(43306902-43307011)
chr3 (663-777)||(53012778-53012890)
chr3 (670-764)||(3069113-3069207)
chr3 (663-777)||(3063962-3064078)
chr3 (663-707)||(365846-365890)
chr3 (711-765)||(45168530-45168584)
chr3 (676-707)||(2472952-2472983)
chr3 (712-751)||(19795067-19795106)
[»] chr8 (11 HSPs)
chr8 (666-777)||(42891896-42892007)
chr8 (663-777)||(22512273-22512387)
chr8 (681-777)||(23573351-23573447)
chr8 (681-773)||(23570355-23570447)
chr8 (705-777)||(18468508-18468580)
chr8 (688-769)||(6845112-6845193)
chr8 (676-764)||(37189630-37189717)
chr8 (711-777)||(22922076-22922142)
chr8 (676-764)||(18180926-18181013)
chr8 (663-708)||(24730821-24730866)
chr8 (688-749)||(42890182-42890243)
[»] chr4 (7 HSPs)
chr4 (666-777)||(22691060-22691171)
chr4 (676-774)||(22988694-22988792)
chr4 (676-772)||(22716425-22716521)
chr4 (681-771)||(6659561-6659651)
chr4 (662-777)||(24667430-24667551)
chr4 (676-773)||(13085321-13085417)
chr4 (672-765)||(19935267-19935359)
[»] chr5 (5 HSPs)
chr5 (663-777)||(21849196-21849310)
chr5 (681-772)||(40779017-40779108)
chr5 (663-765)||(21857122-21857224)
chr5 (663-765)||(21845127-21845229)
chr5 (705-772)||(19501180-19501247)
[»] chr6 (4 HSPs)
chr6 (671-751)||(29341043-29341123)
chr6 (676-769)||(11194429-11194521)
chr6 (663-777)||(18726883-18726995)
chr6 (683-748)||(18203253-18203318)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 87 - 353
Target Start/End: Original strand, 38015464 - 38015730
Alignment:
Q  87 aaatgttcacatattatatattttcctttattaatgacagaaacaaacagaagccaagcacatacctttttcttcgtaatgaggtaatcaaactcgagca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||    
T  38015464 aaatgttcacatattatatattttcctttattaatgacagaaacaaacagaagacaagcacatacctttttcttcgtaatgaggtaatcaaactccatca 38015563  T
Q  187 atgtcaggctaaccagttcatctaactcaggtagccaagtgagcttcagttttgtggtcttcacagatccttcaagatgtaaaacaccacttaaccctgt 286  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38015564 atgtcaggctaactaattcatctaactcaggtagccaagtgagcttcagttttgtggtcttcacagatccttcaagatgtaaaacaccacttaaccctgt 38015663  T
Q  287 gacattcccatcttggtccttatatacttcctttactatggcatttcgccaatccatcaaggttact 353  Q
    ||||||||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||    
T  38015664 gacattcccatcttggtccttctctacttcctttactacggcatttccccaatccatcaaggttact 38015730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 50857783 - 50857670
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||| ||||||    
T  50857783 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttgttttat 50857684  T
Q  763 ttcggcccacaggtt 777  Q
    || ||||||| ||||    
T  50857683 tt-ggcccacgggtt 50857670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 663 - 770
Target Start/End: Complemental strand, 13444324 - 13444217
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| | || ||||||| ||||||||||||||||||||    
T  13444324 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaattttagtaattttcaagaattttctattattatttcgttttattttat 13444225  T
Q  763 ttcggccc 770  Q
    || |||||    
T  13444224 tttggccc 13444217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 663 - 731
Target Start/End: Complemental strand, 13441928 - 13441860
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctat 731  Q
    |||||||  ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  13441928 tgatgcagaagggttttgttagtaatttagtagtatttattatttagccaaatcatagtaattttctat 13441860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 725 - 777
Target Start/End: Complemental strand, 42071598 - 42071546
Alignment:
Q  725 tttctataactttctatgattatttcgttttattttatttcggcccacaggtt 777  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| |||||    
T  42071598 tttctagaactttctattattatttcgttttattttatttcggcccaaaggtt 42071546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 711 - 772
Target Start/End: Original strand, 8931022 - 8931083
Alignment:
Q  711 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  8931022 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 8931083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 663 - 707
Target Start/End: Original strand, 31915338 - 31915382
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattattt 707  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||    
T  31915338 tgatgcatgagggttttattagtaatttagtagtatttattattt 31915382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 707
Target Start/End: Original strand, 43681261 - 43681292
Alignment:
Q  676 ttttattagtaatttagtagtatttattattt 707  Q
    ||||||||||||||||||||||||||||||||    
T  43681261 ttttattagtaatttagtagtatttattattt 43681292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 663 - 772
Target Start/End: Complemental strand, 859495 - 859386
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  859495 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 859396  T
Q  763 ttcggcccac 772  Q
    ||||||||||    
T  859395 ttcggcccac 859386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 663 - 772
Target Start/End: Complemental strand, 1220772 - 1220663
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1220772 tgatgcaggaggattttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1220673  T
Q  763 ttcggcccac 772  Q
    ||||||||||    
T  1220672 ttcggcccac 1220663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 663 - 772
Target Start/End: Complemental strand, 1217499 - 1217390
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  1217499 tgatgcaggagggttttattagtaattcagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 1217400  T
Q  763 ttcggcccac 772  Q
    ||||||||||    
T  1217399 ttcggcccac 1217390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 13886526 - 13886412
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| |||||||||||||    
T  13886526 tgatgcagaagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaactctctattattattacgttttattttat 13886427  T
Q  763 ttcggcccacaggtt 777  Q
    || ||||||| ||||    
T  13886426 tttggcccacgggtt 13886412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 13883022 - 13882910
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||  ||||| |||||| |||||||||||||    
T  13883022 tgatgcaggagggttttattagtaatttagtagtatttattatttagtcaaatcttagtaattttctagaac--tctattattattacgttttattttat 13882925  T
Q  763 ttcggcccacaggtt 777  Q
    || ||||||| ||||    
T  13882924 tttggcccacgggtt 13882910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 671 - 777
Target Start/End: Original strand, 4300314 - 4300420
Alignment:
Q  671 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 770  Q
    |||| ||||||||||||||||||||||||||||||||| ||||| | ||||||||||||| |||| ||||| |||||| ||||||||||||||| |||||    
T  4300314 gagggttttattagtaatttagtagtatttattatttagccaaaacatagtaattttctaaaactctctattattattacgttttattttattttggccc 4300413  T
Q  771 acaggtt 777  Q
    || ||||    
T  4300414 acgggtt 4300420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 663 - 708
Target Start/End: Complemental strand, 4888992 - 4888947
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattattta 708  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||    
T  4888992 tgatgcaggagaattttattagtaatttagtagtatttattattta 4888947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 671 - 708
Target Start/End: Original strand, 4303215 - 4303252
Alignment:
Q  671 gaggattttattagtaatttagtagtatttattattta 708  Q
    |||| |||||||||||||||||||||||||||||||||    
T  4303215 gagggttttattagtaatttagtagtatttattattta 4303252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 663 - 700
Target Start/End: Original strand, 29175573 - 29175610
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtattt 700  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  29175573 tgatgcaggagggttttattagtaatttagtagtattt 29175610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 2e-39; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 662 - 777
Target Start/End: Original strand, 15129167 - 15129282
Alignment:
Q  662 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 761  Q
    |||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||    
T  15129167 atgatgcaggagggttttattaataatttagtagtatttattatttaaccaaatcttagtaattttctagaacttcctattattatttcgttttatttta 15129266  T
Q  762 tttcggcccacaggtt 777  Q
    ||||||||||| ||||    
T  15129267 tttcggcccacgggtt 15129282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 671 - 777
Target Start/End: Complemental strand, 27952656 - 27952550
Alignment:
Q  671 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 770  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  27952656 gagggttttattaataatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 27952557  T
Q  771 acaggtt 777  Q
    || ||||    
T  27952556 acgggtt 27952550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 671 - 777
Target Start/End: Complemental strand, 27956492 - 27956386
Alignment:
Q  671 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 770  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||  ||||    
T  27956492 gagggttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctagaactttctattattatttcgttttattttattttagccc 27956393  T
Q  771 acaggtt 777  Q
    || ||||    
T  27956392 acgggtt 27956386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 671 - 773
Target Start/End: Original strand, 31636093 - 31636195
Alignment:
Q  671 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccc 770  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  31636093 gagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttattttggccc 31636192  T
Q  771 aca 773  Q
    |||    
T  31636193 aca 31636195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 663 - 777
Target Start/End: Original strand, 33655376 - 33655490
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  33655376 tgatgcaggagggttttattggtaatttagtagtatctattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttat 33655475  T
Q  763 ttcggcccacaggtt 777  Q
    |||||||||| ||||    
T  33655476 ttcggcccacgggtt 33655490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 663 - 772
Target Start/End: Original strand, 22011182 - 22011291
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22011182 tgatgcaggagggttttatctttaatttagtagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttat 22011281  T
Q  763 ttcggcccac 772  Q
    || |||||||    
T  22011282 tttggcccac 22011291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 693 - 772
Target Start/End: Original strand, 31633884 - 31633963
Alignment:
Q  693 tagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||    
T  31633884 tagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcattttattttatttcggcccac 31633963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 662 - 777
Target Start/End: Original strand, 22264185 - 22264299
Alignment:
Q  662 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttatttta 761  Q
    ||||||||  |||||||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| |||||    
T  22264185 atgatgcagaaggattttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctattattattttgttttgtttta 22264283  T
Q  762 tttcggcccacaggtt 777  Q
    ||||||| ||| ||||    
T  22264284 tttcggctcacgggtt 22264299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 663 - 777
Target Start/End: Original strand, 35682004 - 35682117
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| |||| ||||||||||  ||||||||  | |||| ||||||||||||||||||||| ||||||||||  |||||||||||| ||||||    
T  35682004 tgatgcaggagggttttcttagtaattttatagtattttat-tttagccaaatcttagtaattttctagaactttctattgttatttcgttttgttttat 35682102  T
Q  763 ttcggcccacaggtt 777  Q
    || | ||||||||||    
T  35682103 ttggacccacaggtt 35682117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 711 - 772
Target Start/End: Original strand, 2155765 - 2155826
Alignment:
Q  711 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| |||||||    
T  2155765 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccac 2155826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 725 - 773
Target Start/End: Original strand, 8781323 - 8781371
Alignment:
Q  725 tttctataactttctatgattatttcgttttattttatttcggcccaca 773  Q
    |||||| |||||||||| ||||||||||||| |||||||||||||||||    
T  8781323 tttctagaactttctattattatttcgttttgttttatttcggcccaca 8781371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 772
Target Start/End: Original strand, 2165721 - 2165782
Alignment:
Q  711 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    ||||||||||| ||||| || |||||| ||| ||||||| ||||| |||||||| |||||||    
T  2165721 caaatcttagtgattttttagaactttgtattattattttgttttgttttattttggcccac 2165782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 7e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 43304297 - 43304183
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  43304297 tgatgcaggagggttttattagtaatttagtagcatttattatttagccaaatcttagtaattttctataactttctattagtatttcgttttattttat 43304198  T
Q  763 ttcggcccacaggtt 777  Q
    || ||||||| ||||    
T  43304197 tttggcccacgggtt 43304183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 663 - 772
Target Start/End: Complemental strand, 43307011 - 43306902
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  43307011 tgatgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaacattctattattatttcgttttattttat 43306912  T
Q  763 ttcggcccac 772  Q
    || |||||||    
T  43306911 tttggcccac 43306902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 663 - 777
Target Start/End: Original strand, 53012778 - 53012890
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||  ||||| ||||||  ||||||||||||    
T  53012778 tgatgcaggagggttttattagtaatttagtagtatttattatttagccaaatcttagtaattttctagaac--tctattattattatgttttattttat 53012875  T
Q  763 ttcggcccacaggtt 777  Q
    ||  |||||| ||||    
T  53012876 tttagcccacgggtt 53012890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 670 - 764
Target Start/End: Complemental strand, 3069207 - 3069113
Alignment:
Q  670 cgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 764  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||  |||| |||||| |||||||||||||||    
T  3069207 cgagggttttattagtaatttagtagtatttattatttagccaaatctttgtaattctctagaactcactattattattacgttttattttattt 3069113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 3064078 - 3063962
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgat--tatttcgttttatttt 760  Q
    ||||||| |||| |||| |||||||||||||||||||||||||||| |||||||||||||||| |||| ||||   ||| ||  |||| |||||||||||    
T  3064078 tgatgcaggagggttttgttagtaatttagtagtatttattatttagccaaatcttagtaattctctagaactcgttattattatattacgttttatttt 3063979  T
Q  761 atttcggcccacaggtt 777  Q
    |||| ||||||| ||||    
T  3063978 attttggcccacgggtt 3063962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 663 - 707
Target Start/End: Complemental strand, 365890 - 365846
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattattt 707  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  365890 tgatgcaggaggattttattagtaatttagtagtatttattattt 365846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 765
Target Start/End: Complemental strand, 45168584 - 45168530
Alignment:
Q  711 caaatcttagtaattttctataactttctatgattatttcgttttattttatttc 765  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  45168584 caaattttagtaattttctaaaaccttctattattatttcgttttattttatttc 45168530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 676 - 707
Target Start/End: Complemental strand, 2472983 - 2472952
Alignment:
Q  676 ttttattagtaatttagtagtatttattattt 707  Q
    ||||||||||||||||||||||||||||||||    
T  2472983 ttttattagtaatttagtagtatttattattt 2472952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 712 - 751
Target Start/End: Original strand, 19795067 - 19795106
Alignment:
Q  712 aaatcttagtaattttctataactttctatgattatttcg 751  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  19795067 aaatcttagtaattttctagaactttctattattatttcg 19795106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 4e-37; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 666 - 777
Target Start/End: Complemental strand, 42892007 - 42891896
Alignment:
Q  666 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 765  Q
    |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||     
T  42892007 tgcaggagggttttattagtaatttagtagtatttattatttaaccaaatcttagtaattttctagaactttctattattatttcgttttattttatttt 42891908  T
Q  766 ggcccacaggtt 777  Q
     |||||| ||||    
T  42891907 agcccacgggtt 42891896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 22512387 - 22512273
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||| ||| |||||||||||| |||||||    
T  22512387 tgatgcaggagagttttattagtaatttagtagtatttattatttagctaaatcttagtaattttctagaactttatattattatttcgtttcattttat 22512288  T
Q  763 ttcggcccacaggtt 777  Q
    |||||||||||||||    
T  22512287 ttcggcccacaggtt 22512273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 681 - 777
Target Start/End: Original strand, 23573351 - 23573447
Alignment:
Q  681 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 777  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||| ||||||||    
T  23573351 ttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcggctcacaggtt 23573447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 681 - 773
Target Start/End: Original strand, 23570355 - 23570447
Alignment:
Q  681 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 773  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||||    
T  23570355 ttagtaattttatagtatttattatttaatcaaatcttagtaattttctagaactttctatttttatttcgttttattttatttcgacccaca 23570447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 705 - 777
Target Start/End: Original strand, 18468508 - 18468580
Alignment:
Q  705 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 777  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||| ||||    
T  18468508 tttaaccaaatcttagtaattttctagaactttctattattatttcgttttgttttattttggcccacgggtt 18468580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 6845112 - 6845193
Alignment:
Q  688 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 769  Q
    |||| ||||||||||||||||  |||||||||||||||||||| |||| ||||| |||||| ||||| ||||||||| ||||    
T  6845112 tttattagtatttattatttagtcaaatcttagtaattttctaaaactctctattattattacgtttgattttattttggcc 6845193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 676 - 764
Target Start/End: Original strand, 37189630 - 37189717
Alignment:
Q  676 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttattt 764  Q
    |||| ||||||||||||||||||||  | |||| |||||||||||||| ||| || |||||| ||| ||||||| ||||||||||||||    
T  37189630 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaactttttagaactttatattattattttgttttattttattt 37189717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 711 - 777
Target Start/End: Complemental strand, 22922142 - 22922076
Alignment:
Q  711 caaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacaggtt 777  Q
    ||||||||||| |||||||| |||||||||| ||||||| ||||| |||||||| ||||||| ||||    
T  22922142 caaatcttagtgattttctagaactttctattattattttgttttgttttattttggcccacgggtt 22922076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 764
Target Start/End: Complemental strand, 18181013 - 18180926
Alignment:
Q  676 ttttattagtaatttagtagtatttattatttatc-caaatcttagtaattttctataactttctatgattatttcgttttattttattt 764  Q
    |||| ||||||||||||||||||||  |||||| | ||||||||| ||||||| || || |||||||  |||||||||||| ||||||||    
T  18181013 ttttcttagtaatttagtagtattt--tatttaactcaaatcttaataattttttagaaatttctattcttatttcgttttgttttattt 18180926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 663 - 708
Target Start/End: Original strand, 24730821 - 24730866
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattattta 708  Q
    ||||||| |||| ||||||||||||||||||||||||||| |||||    
T  24730821 tgatgcaggagggttttattagtaatttagtagtatttatgattta 24730866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 749
Target Start/End: Original strand, 42890182 - 42890243
Alignment:
Q  688 tttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattattt 749  Q
    |||| |||||| ||||||||| ||||||   |||||||||||| |||||||||| |||||||    
T  42890182 tttattagtatctattatttagccaaatggaagtaattttctagaactttctattattattt 42890243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 666 - 777
Target Start/End: Original strand, 22691060 - 22691171
Alignment:
Q  666 tgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 765  Q
    |||| |||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  22691060 tgcaggagggttttattaataatttagtagtatttattatttagccaaatcttagtaattttctagaactttgtattattatttcgttttattttatttc 22691159  T
Q  766 ggcccacaggtt 777  Q
     |||||| ||||    
T  22691160 agcccactggtt 22691171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 676 - 774
Target Start/End: Complemental strand, 22988792 - 22988694
Alignment:
Q  676 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccacag 774  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||||    
T  22988792 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccacag 22988694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 676 - 772
Target Start/End: Original strand, 22716425 - 22716521
Alignment:
Q  676 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    |||||||||||||||| |||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||| |||||||||||||| ||||||    
T  22716425 ttttattagtaatttaatagtatttattatttagccaaatcttaataattttctagaactttctattattatttctttttattttatttcagcccac 22716521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 681 - 771
Target Start/End: Complemental strand, 6659651 - 6659561
Alignment:
Q  681 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggccca 771  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||    
T  6659651 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattattttgttttattttatttcggccca 6659561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 662 - 777
Target Start/End: Original strand, 24667430 - 24667551
Alignment:
Q  662 atgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttcta-taa-----ctttctatgattatttcgtttt 755  Q
    |||||||| ||||  ||||||| ||||||||||||| |||||||||| ||||||| |||||||||| || |||     |||||||| |||||||| ||||    
T  24667430 atgatgcaggagggctttattattaatttagtagtagttattatttagccaaatcgtagtaattttttagtaattcatctttctattattatttcatttt 24667529  T
Q  756 attttatttcggcccacaggtt 777  Q
    |||||||||||| |||| ||||    
T  24667530 attttatttcggtccacgggtt 24667551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 676 - 773
Target Start/End: Complemental strand, 13085417 - 13085321
Alignment:
Q  676 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccaca 773  Q
    |||| ||||||||||  ||||||||  | |||| ||| ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  13085417 tttttttagtaattttatagtattttat-tttagccacatcttagtaatattctagaactttctattattatttcgttttgttttatttcggctcaca 13085321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 672 - 765
Target Start/End: Original strand, 19935267 - 19935359
Alignment:
Q  672 aggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttc 765  Q
    |||||||| ||||||||||||||||||||  | ||||  ||||||||| | |||||  | |||||||||| ||||||||||||| |||||||||    
T  19935267 aggattttcttagtaatttagtagtattttat-tttagtcaaatcttaatcatttttcagaactttctattattatttcgttttgttttatttc 19935359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 663 - 777
Target Start/End: Complemental strand, 21849310 - 21849196
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21849310 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21849211  T
Q  763 ttcggcccacaggtt 777  Q
    |||||||||| ||||    
T  21849210 ttcggcccacgggtt 21849196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 681 - 772
Target Start/End: Complemental strand, 40779108 - 40779017
Alignment:
Q  681 ttagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    ||||||||||   ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  40779108 ttagtaattttacagtatttattatttagccaaatcttagtaattttctagaactttctattattatttcgttttattttatttcggcccac 40779017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 663 - 765
Target Start/End: Complemental strand, 21857224 - 21857122
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    |||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21857224 tgatgcacgagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21857125  T
Q  763 ttc 765  Q
    |||    
T  21857124 ttc 21857122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 663 - 765
Target Start/End: Complemental strand, 21845229 - 21845127
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| |||| ||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||||  |||||| ||||||||||||    
T  21845229 tgatgcaagagggttttcttagtaattttatagtatttattatttaaccaaatcttagtaattttctagaactttctatttttattttgttttattttat 21845130  T
Q  763 ttc 765  Q
    |||    
T  21845129 ttc 21845127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 705 - 772
Target Start/End: Complemental strand, 19501247 - 19501180
Alignment:
Q  705 tttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcccac 772  Q
    |||| ||||||||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||    
T  19501247 tttacccaaatcttagtaattttctaaaactttctattattattttgttttgttttatttcggcccac 19501180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 671 - 751
Target Start/End: Complemental strand, 29341123 - 29341043
Alignment:
Q  671 gaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcg 751  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||| |||||||||    
T  29341123 gagggttttattagtaatttagtagtatttattttttagccaaatcttagtaattttctaaaactttctattattatttcg 29341043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 676 - 769
Target Start/End: Original strand, 11194429 - 11194521
Alignment:
Q  676 ttttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttatttcggcc 769  Q
    |||| ||||||||||||||||||||  | |||| ||||||||||||||||||||| |||||||||  ||||||| ||||| |||||||||||||    
T  11194429 ttttcttagtaatttagtagtattttat-tttagccaaatcttagtaattttctagaactttctagtattattttgttttgttttatttcggcc 11194521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 663 - 777
Target Start/End: Original strand, 18726883 - 18726995
Alignment:
Q  663 tgatgcacgaggattttattagtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatttcgttttattttat 762  Q
    ||||||| |||| |||| ||||||||||  |||| |||  | |||| |||||||||||| |||||||| |||||||||| ||||||||||||| ||||||    
T  18726883 tgatgcaggagggtttttttagtaattttatagttttttat-tttagccaaatcttagtcattttctagaactttctattattatttcgtttt-ttttat 18726980  T
Q  763 ttcggcccacaggtt 777  Q
    |||||||||| ||||    
T  18726981 ttcggcccacgggtt 18726995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 683 - 748
Target Start/End: Original strand, 18203253 - 18203318
Alignment:
Q  683 agtaatttagtagtatttattatttatccaaatcttagtaattttctataactttctatgattatt 748  Q
    ||||||||  ||||||||||||||||  |||||||||||||||||||| |||| ||||| ||||||    
T  18203253 agtaattttatagtatttattatttagtcaaatcttagtaattttctagaactctctattattatt 18203318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University