View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_11 (Length: 451)
Name: NF21276_low_11
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 182 - 437
Target Start/End: Complemental strand, 35702279 - 35702018
Alignment:
| Q |
182 |
gtgtctagtttgacttgatgattaaaattagaatatgttgtacagtattaaatagaaagaagaaaagaatttnnnnnnnnnnn------gggaaggttga |
275 |
Q |
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| T |
35702279 |
gtgtctagtttgacttgatgattaaaactagaatatgttgtacagtattaaatagaaagaagaaaagaattaaaaaaaataaaataaaagggaaggttga |
35702180 |
T |
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| Q |
276 |
taataataccttgtggccattgtggaagaggtgaaggaagagaaaagggaagtggatcagagtcaaagaattctgggaaactatcccaacaaaaacactc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35702179 |
taataataccttgtggccattgtggaagaggtgaaggcaaagaaaagggaagtggatcagagtcaaagaattctgggaaactatcccaacaaaaacactc |
35702080 |
T |
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| Q |
376 |
aaaaccaaacatctcttaccaaccacaaagaagaagctgcgaagagagagatagagaagggt |
437 |
Q |
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| T |
35702079 |
aaaaccaaacatctcttaccaaccacaaagaagaagctgagaagagagagatagagaagggt |
35702018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 280 - 430
Target Start/End: Complemental strand, 35722855 - 35722705
Alignment:
| Q |
280 |
aataccttgtggccattgtggaagaggtgaaggaagagaaaagggaagtggatcagagtcaaagaattctgggaaactatcccaacaaaaacactcaaaa |
379 |
Q |
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| T |
35722855 |
aataccttgtggccattgtggaagaggtgaaggaagagaaaagggaagtggatcagagtcaaagaattctgggaaactatcccaacaaaaacactcaaaa |
35722756 |
T |
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| Q |
380 |
ccaaacatctcttaccaaccacaaagaagaagctgcgaagagagagataga |
430 |
Q |
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| T |
35722755 |
ccaaacatctcttaccaaccacaaagaagaagctgagaagagagagataga |
35722705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 35702465 - 35702425
Alignment:
| Q |
7 |
atcaagaagtaagcttgaaaattaactaaaaccaatatctg |
47 |
Q |
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| T |
35702465 |
atcaagaagtaagcttgaaaattaactaaaaccaatatctg |
35702425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 47
Target Start/End: Complemental strand, 35723083 - 35723046
Alignment:
| Q |
10 |
aagaagtaagcttgaaaattaactaaaaccaatatctg |
47 |
Q |
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| T |
35723083 |
aagaactaagcttgaaaattaagtaaaaccaatatctg |
35723046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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