View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21276_low_12 (Length: 441)
Name: NF21276_low_12
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_12 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 16990377 - 16990632
Alignment:
| Q |
16 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16990377 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
16990476 |
T |
|
| Q |
116 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16990477 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
16990576 |
T |
|
| Q |
216 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
16990577 |
cacaatctaaccatttatcttgtgtgacccatggtggaaaggttttataccttccc |
16990632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 37242223 - 37241968
Alignment:
| Q |
16 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37242223 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
37242124 |
T |
|
| Q |
116 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242123 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
37242024 |
T |
|
| Q |
216 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
37242023 |
cacaatctaaccatttatcttgtgtgacccatggtaggaaggttttataccttccc |
37241968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 1258935 - 1258663
Alignment:
| Q |
16 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
1258935 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctag |
1258836 |
T |
|
| Q |
116 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1258835 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
1258736 |
T |
|
| Q |
216 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttcccttcccatgtgaaatgccacctc |
293 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
1258735 |
cataatctaaccatttatcttgtgtgatccatggtgggaaggttttata-----ccttcccatgtgaaatgccacctc |
1258663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 34873478 - 34873736
Alignment:
| Q |
16 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873478 |
atgaaggtaagtcatgctttggttcacccacttaaa-aggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
34873576 |
T |
|
| Q |
116 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873577 |
agggagacggccacaaagctgggagcaagatgacaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
34873676 |
T |
|
| Q |
216 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttcccttcccatgtgaaatgccacct |
292 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
34873677 |
cac------------tatcttgtgtgatccatggtgggaaggttttata-----ccttcccatgtgaaatgccacct |
34873736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 13810019 - 13809952
Alignment:
| Q |
194 |
atgataagctttaatagaaatgcacaatctaaccatttatcttgtgtgacccatggtgggaaggtttt |
261 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
13810019 |
atgataagctttaatagaagtgcacaatgtaaccatttatcttgtgtgacccatggtggaaaagtttt |
13809952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 271
Target Start/End: Original strand, 2319993 - 2320248
Alignment:
| Q |
16 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
115 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319993 |
atgaaggtaagtcatgctttgtttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
2320092 |
T |
|
| Q |
116 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2320093 |
agggagacggccacaaagctgggagcaagatgagaaaaatttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
2320192 |
T |
|
| Q |
216 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2320193 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttataccttccc |
2320248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 252
Target Start/End: Original strand, 38544223 - 38544340
Alignment:
| Q |
135 |
tgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatc |
234 |
Q |
| |
|
|||||| |||||||||||||||||||| | ||| | ||| || || |||| |||| ||||||||| |||||||||| || |||||||||||||| ||| |
|
|
| T |
38544223 |
tgggaggaagatgagaaaagtttggaatgagaaaccattagaattaggtgtgagagagcatgataagatttaatagaagtgtacaatctaaccattgatc |
38544322 |
T |
|
| Q |
235 |
ttgtgtgacccatggtgg |
252 |
Q |
| |
|
|||||| |||||||||| |
|
|
| T |
38544323 |
ttgtgtttcccatggtgg |
38544340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 31234386 - 31234131
Alignment:
| Q |
16 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234386 |
atgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatggagcctgg |
31234287 |
T |
|
| Q |
116 |
agggagacggccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatg |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
31234286 |
agggagacgaccacaaagctgggagcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtaggagaacatgataagctttaatagaaatg |
31234187 |
T |
|
| Q |
216 |
cacaatctaaccatttatcttgtgtgacccatggtgggaaggttttttaccttccc |
271 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
31234186 |
tacaatctaatcatttatcttgtgtgatccatggtgggaaggttttataccttccc |
31234131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 18246323 - 18246192
Alignment:
| Q |
140 |
gcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18246323 |
gcaagatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtg |
18246224 |
T |
|
| Q |
240 |
tgacccatggtgggaaggttttttaccttccc |
271 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| |
|
|
| T |
18246223 |
tgacccatggtgggaaagttttataccttccc |
18246192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 39087407 - 39087518
Alignment:
| Q |
144 |
gatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtgtgac |
243 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| |||| || ||||||||||||||||||| ||| ||||||||||| ||||||||||||||| || ||||| |
|
|
| T |
39087407 |
gatgagaaaagtttggaaagagaagcaattaagattaggtgtgggagaacatgataaggttttatagaaatgcaaaatctaaccatttattttatgtgat |
39087506 |
T |
|
| Q |
244 |
ccatggtgggaa |
255 |
Q |
| |
|
| |||||||||| |
|
|
| T |
39087507 |
ctatggtgggaa |
39087518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 367 - 422
Target Start/End: Complemental strand, 41659739 - 41659684
Alignment:
| Q |
367 |
aacctgggttgggttcaagtgaccataggaacatggaagacatgagcatccaggaa |
422 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||| |||||||||||||||| |||||| |
|
|
| T |
41659739 |
aacctgggttgtgttcaaatgaccatagaaacttggaagacatgagcattcaggaa |
41659684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 41687598 - 41687646
Alignment:
| Q |
367 |
aacctgggttgggttcaagtgaccataggaacatggaagacatgagcat |
415 |
Q |
| |
|
||||||||||| |||| ||||||||||| || |||||||||||||||| |
|
|
| T |
41687598 |
aacctgggttgagttcgagtgaccatagaaatttggaagacatgagcat |
41687646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 144 - 248
Target Start/End: Original strand, 20040174 - 20040276
Alignment:
| Q |
144 |
gatgagaaaagtttggaaagtgaagctattgagatcagatgtgggagaacatgataagctttaatagaaatgcacaatctaaccatttatcttgtgtgac |
243 |
Q |
| |
|
||||||||||||||||| || |||| ||| |||| || ||||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||||| |
|
|
| T |
20040174 |
gatgagaaaagtttggagag--aagccattaagattaggtgtgggagaacatgataagatttaatagaagtgcacaatctaaccatttatcctatgtgat |
20040271 |
T |
|
| Q |
244 |
ccatg |
248 |
Q |
| |
|
||||| |
|
|
| T |
20040272 |
ccatg |
20040276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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