View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_13 (Length: 425)
Name: NF21276_low_13
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 409
Target Start/End: Complemental strand, 6878925 - 6878526
Alignment:
| Q |
10 |
aatatacacaactcaaaccaaccaacacttccactatggcagtctctgccttctccaaatcagagtaatgcaatgtctgcagaagcattgccgtaggctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6878925 |
aatatacacaactcaaaccaaccaacacttccactatggcagtctctgccttctccaaatcagagtaatgcaatgtctgcagaagcattgccgtaggctt |
6878826 |
T |
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| Q |
110 |
tgtctcaaatcttgtcttctccaaatgcctttccccatgccaccggactgtgtcatgcgccaccggagacagccattccattagctcctccaccgcctcc |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6878825 |
tgtctcgaatcttgtcttctccaaatgcctttccccatgccaccggactgtgtcatgcgccaccggagacagccattccattagctcctccaccgcctcc |
6878726 |
T |
|
| Q |
210 |
cgccacccttcggccagtgagtgcccgtcatttccttcgtctccctctttcgcccaccgtccccttagcttcgcctttaccttcattcttaatctgcccg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6878725 |
cgccacccttcggccagtgagtgcccgtcatttccttcgtctccctctttcgcccaccgtccccttagcttcgcctttaccttcattcttaatcttcccg |
6878626 |
T |
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| Q |
310 |
gtagcatctcgtataaggcctcacgtgcgtcctctccaactgtcgcgggcgcatggagacaacgctccgccagtaggatcagattagcataccttaaagc |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
6878625 |
gtagcatctcgtataaggcctcacgtgcgtcctctccaactgtcgcgggcgcatggagacaacgctccgccagtaggatcaaattagcatacctcaaagc |
6878526 |
T |
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