View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_15 (Length: 396)
Name: NF21276_low_15
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 12282100 - 12281720
Alignment:
| Q |
1 |
accaccacatcttccacccttttccatcacatcaaagaaacctaccataccactaactcatcctccgccgttttcgacttactcatcaaatcatactccc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12282100 |
accaccacatcttccacccttttccatcacatcaaagaaacctaccataccactaactcatcctccgccgttttcgacttactcatcaaatcatactccc |
12282001 |
T |
|
| Q |
101 |
aattaaacctcattgacaatgctattcacaccctccacctcgctactcgccatggcttctccccgggcgtgttatcctacaattcaatactcgattcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12282000 |
aattaaacctcattgacaatgctattcacaccctccacctcgctactcgccatggcttctccccgggcgtgttatcctacaattcaatactcgattcaat |
12281901 |
T |
|
| Q |
201 |
cacccgtagcgggtcccatccgttattatcaattcaacacgctaaccgtgttttttgtgacatggttagaaacaatgtgtcaccgaatatatacacttat |
300 |
Q |
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|| |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12281900 |
catacgtagcggaccccattcgttattatcaattcaacaggctaaccgtgttttttgtgacatggttagaaacaatgtgtcaccgaatatatacacttat |
12281801 |
T |
|
| Q |
301 |
aatgtaatgatccgcggaatggtttccgcagggagatttgattctggtctccatttcatgaatgagatggagacgaaaggt |
381 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12281800 |
aatgtaatgatccgcggaatggtttccgtggggagatttgattctggtctccatttcatgaatgagatggagacgaaaggt |
12281720 |
T |
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