View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_16 (Length: 376)
Name: NF21276_low_16
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 38710186 - 38710544
Alignment:
| Q |
1 |
tacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacaatctcattgagtaattatttgatagattgtcaaatgtttgccatatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38710186 |
tacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacgatctcattgagtaattatttgatagattgtcaaacgtttgccatatg |
38710285 |
T |
|
| Q |
101 |
gaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaaggccgagaggaaacatttgaaaccttggatcaaaataacatgnnnnnnn |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710286 |
gaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaaggccgagaggaaacatttgaaaccttggatcaaaataacatgaaaaaaa |
38710385 |
T |
|
| Q |
201 |
nngatgaaataccaaattgttatctgaaattaagttaatggaccaaaagcactttattattttctttatcacgcaagcagctgactttggaatttggtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38710386 |
aagatgaaataccaaattgttatctgaaattaagttaatggaccaaaatcactttattattttc-ttatcacgcaagcagctgactttggaatttggtga |
38710484 |
T |
|
| Q |
301 |
tgcaaatagtggtttggatctagaggccgaagaagatgtcgatcgatgggatgtccagtt |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38710485 |
tgcaaatagtggtttggatctagaggccgaagaagatgtcgatcgatgggatgtccagtt |
38710544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 685003 - 684965
Alignment:
| Q |
211 |
accaaattgttatctgaaattaagttaatggaccaaaag |
249 |
Q |
| |
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|
| T |
685003 |
accaaattgttatctgaaattaagttaagggactaaaag |
684965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 11362044 - 11362082
Alignment:
| Q |
211 |
accaaattgttatctgaaattaagttaatggaccaaaag |
249 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||| |
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|
| T |
11362044 |
accaaattgttatctgaaattaagttaagggacgaaaag |
11362082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 25061351 - 25061313
Alignment:
| Q |
211 |
accaaattgttatctgaaattaagttaatggaccaaaag |
249 |
Q |
| |
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|||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
25061351 |
accaaattgttacctgaaattaagttaagggaccaaaag |
25061313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 32809383 - 32809421
Alignment:
| Q |
211 |
accaaattgttatctgaaattaagttaatggaccaaaag |
249 |
Q |
| |
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|||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
32809383 |
accaaactgttacctgaaattaagttaatggaccaaaag |
32809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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