View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_19 (Length: 343)

Name: NF21276_low_19
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_19
NF21276_low_19
[»] chr5 (14 HSPs)
chr5 (210-334)||(41486464-41486588)
chr5 (210-330)||(41488204-41488326)
chr5 (36-146)||(41487170-41487280)
chr5 (211-329)||(41490768-41490886)
chr5 (210-326)||(41489907-41490023)
chr5 (221-318)||(41489063-41489160)
chr5 (20-146)||(41486287-41486413)
chr5 (210-316)||(41487341-41487449)
chr5 (36-105)||(41488912-41488981)
chr5 (36-146)||(41489753-41489853)
chr5 (36-84)||(41488043-41488091)
chr5 (42-102)||(36236159-36236219)
chr5 (56-105)||(41490640-41490689)
chr5 (39-104)||(36269844-36269909)
[»] chr2 (3 HSPs)
chr2 (51-104)||(10850713-10850766)
chr2 (51-104)||(10878227-10878280)
chr2 (52-104)||(15641993-15642045)
[»] chr1 (1 HSPs)
chr1 (67-104)||(19352105-19352142)
[»] chr8 (1 HSPs)
chr8 (42-102)||(1532116-1532176)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 41486464 - 41486588
Alignment:
Q  210 atcactcttattgtgcaagagacactctctttctctaagcttcaaaaaggttatcctgcacactttatttgctccttgaagaattccctttctcttttat 309  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  41486464 atcactcttattgtgcaagagacactctctttctcttagcttcaaaaaggttatcctgcaaactttatttggtccttgaagaattccctttctcttttat 41486563  T
Q  310 ctacaactcaacctcttcttcttct 334  Q
    || ||||||||||| ||||||||||    
T  41486564 ctgcaactcaaccttttcttcttct 41486588  T

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Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 41488204 - 41488326
Alignment:
Q  210 atcactcttattgtg--caagagacactctctttctctaagcttcaaaaaggttatcctgcacactttatttgctccttgaagaattccctttctctttt 307  Q
    |||||||||||||||  |||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  41488204 atcactcttattgtgtgcaagagacactccctttctctaaacttcaaaaaggttatcctgcaaactttatttgctccttgaagaattctctttctctttt 41488303  T
Q  308 atctacaactcaacctcttcttc 330  Q
    |||  ||||||||||||||||||    
T  41488304 atccccaactcaacctcttcttc 41488326  T

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Target: chr5; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 41487170 - 41487280
Alignment:
Q  36 agtgccagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtttcaagctttaataaataaactggtgcccac 135  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||| |||||||||||||||||    
T  41487170 agtgctagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaatgattatagttacaaactgtaattaataaactggtgcccac 41487269  T
Q  136 tttccaaaaac 146  Q
    |||||||||||    
T  41487270 tttccaaaaac 41487280  T

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Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 211 - 329
Target Start/End: Original strand, 41490768 - 41490886
Alignment:
Q  211 tcactcttattgtgcaagagacactctctttctctaagcttcaaaaaggttatcctgcacactttatttgctccttgaagaattccctttctcttttatc 310  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||||||||||||| |||||| | |||||||||||||    
T  41490768 tcactcttattgtgcaagagagactctctttctctaagcttcaaaaaggttatcctgcaaaatctatttgctccttggagaatttcttttctcttttatc 41490867  T
Q  311 tacaactcaacctcttctt 329  Q
    | |||||||||||||||||    
T  41490868 tccaactcaacctcttctt 41490886  T

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Target: chr5; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 210 - 326
Target Start/End: Original strand, 41489907 - 41490023
Alignment:
Q  210 atcactcttattgtgcaagagacactctctttctctaagcttcaaaaaggttatcctgcacactttatttgctccttgaagaattccctttctcttttat 309  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||    
T  41489907 atcactcttattacgcaagaaacactctctttctctaagcttcaaaaagggtatcatgcaaactttatttgctccttgaagaattctctttctcttttat 41490006  T
Q  310 ctacaactcaacctctt 326  Q
    || ||||||||||||||    
T  41490007 ctccaactcaacctctt 41490023  T

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Target: chr5; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 41489063 - 41489160
Alignment:
Q  221 tgtgcaagagacactctctttctctaagcttcaaaaaggttatcctgcacactttatttgctccttgaagaattccctttctcttttatctacaactc 318  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  41489063 tgtgcaagaaacactctctttctctaagcttcaaaaaggttatcctgcaaactttatttgctcattgaagaattctctttctcttttatctccaactc 41489160  T

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Target: chr5; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 146
Target Start/End: Original strand, 41486287 - 41486413
Alignment:
Q  20 gtatgtgtcggttcgcagtgccagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtttcaagctttaataa 119  Q
    ||||| ||||||||| ||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||  |||||| |||| |    
T  41486287 gtatgcgtcggttcgtagtactagtactatttaattaagtataataagctatcttaatattgcaaacaagtagaaggattatagtagcaagctgtaatta 41486386  T
Q  120 ataaactggtgcccactttccaaaaac 146  Q
    |||||  |||||| |||||||||||||    
T  41486387 ataaaacggtgccaactttccaaaaac 41486413  T

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Target: chr5; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 41487341 - 41487449
Alignment:
Q  210 atcactcttattgtg--caagagacactctctttctctaagcttcaaaaaggttatcctgcacactttatttgctccttgaagaattccctttctctttt 307  Q
    |||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||| |||||||||||    
T  41487341 atcactcttattgtgtgcaagaaacactctctttctctaagcttcaaaaaggttatcctacaaactttatttgctcattgaagaattctctttctctttt 41487440  T
Q  308 atctacaac 316  Q
    |||| ||||    
T  41487441 atctccaac 41487449  T

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Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 36 - 105
Target Start/End: Original strand, 41488912 - 41488981
Alignment:
Q  36 agtgccagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtt 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41488912 agtgctagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtt 41488981  T

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Target: chr5; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 146
Target Start/End: Original strand, 41489753 - 41489853
Alignment:
Q  36 agtgccagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtttcaagctttaataaataaactggtgcccac 135  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||          |||||||| |||| ||| || |||| |||||||||||||||||    
T  41489753 agtgctagtactatttaattaagtatagtgagctatcttaatattgc----------aaggattaaagttacaaactgtaattaataaactggtgcccac 41489842  T
Q  136 tttccaaaaac 146  Q
    |||||||||||    
T  41489843 tttccaaaaac 41489853  T

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Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 41488043 - 41488091
Alignment:
Q  36 agtgccagtactatttaattaagtatagtgagctatcttaatattgcaa 84  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41488043 agtgctagtactatttaattaagtatagtgagctatcttaatattgcaa 41488091  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 36236219 - 36236159
Alignment:
Q  42 agtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattata 102  Q
    |||||||  |||||||||||||| |  ||||||||||||||||| ||||||||||||||||    
T  36236219 agtactacctaattaagtatagtaatatatcttaatattgcaaaaaagtagaaggattata 36236159  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 41490640 - 41490689
Alignment:
Q  56 aagtatagtgagctatcttaatattgcaaacaagtagaaggattatagtt 105  Q
    |||||| || || |||||||||||| ||||||||||||||||||||||||    
T  41490640 aagtattgtaagttatcttaatattacaaacaagtagaaggattatagtt 41490689  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 104
Target Start/End: Original strand, 36269844 - 36269909
Alignment:
Q  39 gccagtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagt 104  Q
    |||||||||| |||||||| || | | || ||||||||| ||||||  ||||||||||||||||||    
T  36269844 gccagtactacttaattaaatacaataagttatcttaatgttgcaacaaagtagaaggattatagt 36269909  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 10850713 - 10850766
Alignment:
Q  51 taattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagt 104  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||||||||||    
T  10850713 taattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagt 10850766  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 10878227 - 10878280
Alignment:
Q  51 taattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagt 104  Q
    |||||||||||||| |||||||||||||||||||| | ||||||||||||||||    
T  10878227 taattaagtatagtaagctatcttaatattgcaaaaaggtagaaggattatagt 10878280  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 15642045 - 15641993
Alignment:
Q  52 aattaagtatagtgagctatcttaatattgcaaacaagtagaaggattatagt 104  Q
    ||||||||||||| |  ||| |||||||||| |||||||||||| ||||||||    
T  15642045 aattaagtatagtaaattattttaatattgcgaacaagtagaagaattatagt 15641993  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 104
Target Start/End: Original strand, 19352105 - 19352142
Alignment:
Q  67 gctatcttaatattgcaaacaagtagaaggattatagt 104  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  19352105 gctatcttaatattgtaaacaagtagaatgattatagt 19352142  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 1532116 - 1532176
Alignment:
Q  42 agtactatttaattaagtatagtgagctatcttaatattgcaaacaagtagaaggattata 102  Q
    |||||||| |||||||||||| | ||||||||  | |||||||| ||||||||| ||||||    
T  1532116 agtactatctaattaagtatactaagctatctagacattgcaaaaaagtagaagaattata 1532176  T

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