View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_20 (Length: 336)
Name: NF21276_low_20
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 34228753 - 34228435
Alignment:
| Q |
1 |
acattgttctgtctctctgtgattctctgcataatattacacgaaaacatgagttggccaaaagagtaccactcttgcagcaaaatatgataaatactcc |
100 |
Q |
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| T |
34228753 |
acattgttctgtctctctgtgattctctgcataatattacacgaaaacatgagttggccaaaagagtaccactcttgcagcaaaatatgataaatactcc |
34228654 |
T |
|
| Q |
101 |
tataacatcttaaagttaccataaatgctctctaggaatgttaaaaaa-taccaaaaaccgaactcctaaattgaacagtagcgaaaaaagtcaaattga |
199 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228653 |
tataacatcttaaagttaccataaatgctctctaggagtgttaaaaaaataccaaaaaccgaactcctaaattgaacagtagcgaaaaaagtcaaattga |
34228554 |
T |
|
| Q |
200 |
gagacaggcagttctcgaaagttctgttcaactcagtaagtggattatccgtccgaggtttggttcttttcaacgtggttcagttcggttttaannnnnn |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34228553 |
gagacaggcagttctcgaaagttctgttcaactcagtaagtggattatccgtccgaggtttggttcttttcaacgtggttcagttcggttttaatttttt |
34228454 |
T |
|
| Q |
300 |
naaacagtcctaacagttc |
318 |
Q |
| |
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|||||||||||||||||| |
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| T |
34228453 |
taaacagtcctaacagttc |
34228435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29140198 - 29140077
Alignment:
| Q |
1 |
acattgttctgtctctctgtgattctctgcataatattacacgaaaacatgagttggccaaaagagtaccactcttgcag-caaaatatgataaatactc |
99 |
Q |
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|||||||||||||| ||||| ||||||||||||| ||| || |||||||||||| |||||||||||||| |||||||| | ||||||||||||||| |
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| T |
29140198 |
acattgttctgtctatctgtcattctctgcataacattgcaacaaaacatgagttaaccaaaagagtaccagtcttgcagccgaaatatgataaatacag |
29140099 |
T |
|
| Q |
100 |
ctataacatcttaaagttacca |
121 |
Q |
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|||||||||||||||||||||| |
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| T |
29140098 |
ctataacatcttaaagttacca |
29140077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 9571858 - 9571812
Alignment:
| Q |
51 |
gagttggccaaaagagtaccactcttgcag-caaaatatgataaata |
96 |
Q |
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||||||||||||||||||||| |||||||| |||||| ||||||||| |
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| T |
9571858 |
gagttggccaaaagagtaccattcttgcagccaaaatgtgataaata |
9571812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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