View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_21 (Length: 330)

Name: NF21276_low_21
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_21
NF21276_low_21
[»] chr2 (1 HSPs)
chr2 (19-312)||(43636173-43636468)


Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 43636173 - 43636468
Alignment:
Q  19 cagtaacatgtctagttttt-atgagttacaatatctttcacctttgtctaatctagccaaccaaaacatgacatgatctatatcaaacttgtttacaaa 117  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43636173 cagtaacatgtctagttttttatgagttacaatatctttcacctttgtctaatctagccaaccaaaacatgacatgatctatatcaaacttgtttatcaa 43636272  T
Q  118 catgttccatgatttagttgattatgaaatgaacaaaa-atgactcnnnnnnnctaaacagaacagaactaagcaattgtaaaatctaaaaacaataaga 216  Q
    |||||||||||||||||||||||||| ||||||||||| || ||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  43636273 catgttccatgatttagttgattatgcaatgaacaaaagattactcaaaaaaactaaacagaacagaactaagcaattgtaaaatctaaaaacaataaga 43636372  T
Q  217 aggatgatgtaaataaacatactttgcagcaggagcattagcatgctcatttgttccagaaacctgtttattcttttcatgtacagattgatgaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43636373 aggatgatgtaaataaacatactttgcagcaggagcattagcatgctcatttgttccagaaacctgtttattcttttcatgtacagattgatgaag 43636468  T

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