View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_25 (Length: 305)
Name: NF21276_low_25
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_25 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 5 - 305
Target Start/End: Original strand, 31127099 - 31127398
Alignment:
| Q |
5 |
gagaggttaaatgcagcgattccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagag |
104 |
Q |
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| T |
31127099 |
gagaggttaaatgcagcgattccatttctatggaaagtgaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagag |
31127198 |
T |
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| Q |
105 |
gactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtc |
204 |
Q |
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| T |
31127199 |
gactc-gccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtc |
31127297 |
T |
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| Q |
205 |
attcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctc |
304 |
Q |
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| T |
31127298 |
attcagatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctc |
31127397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 31077796 - 31078080
Alignment:
| Q |
20 |
gcgattccatttctatggaaagtcaagaaaatattaaatgttgg-atcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaag |
118 |
Q |
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| T |
31077796 |
gcgattccattgatatggaaagtgaagaaaatattaaacatagggatc-gagcgacgattgaaagaagccgtcgctgaagtaagaggactt-gctacaag |
31077893 |
T |
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| Q |
119 |
aatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatct |
218 |
Q |
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| T |
31077894 |
aatcgttagggaaaagaaaaaagagcttaaagaaaaagcaactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatca |
31077993 |
T |
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| Q |
219 |
tttgttgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctct |
305 |
Q |
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| T |
31077994 |
tttgtagttgatattgtaataagctttattcttgctgggaaagatacaacttcagctgcactcacgtggttcttttggctactctct |
31078080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 24 - 305
Target Start/End: Original strand, 31131826 - 31132106
Alignment:
| Q |
24 |
ttccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcg |
123 |
Q |
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| T |
31131826 |
ttccatttttatggaaagtgaaaaaattcctaaacattggacccgagcgacggttgaaagaagctgtcgctgaagtaagggggctc-gccacaaaaattg |
31131924 |
T |
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| Q |
124 |
ttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgt |
223 |
Q |
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| T |
31131925 |
ttagggaaaagaaaaaagagcttaaagaaaaggaaaccttggaatcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgt |
31132024 |
T |
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| Q |
224 |
tgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggttcttttggttactctct |
305 |
Q |
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| T |
31132025 |
agttgatattgtgataagctttattcttgctgggagagatacaacttcagctgcactcacgtggttctttttgttaatctct |
31132106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 31128779 - 31129011
Alignment:
| Q |
5 |
gagaggttaaatgcagcgattccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagag |
104 |
Q |
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| T |
31128779 |
gagaggttaaatgatgccattccatttctatggaaagtgaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgttgaagtaagag |
31128878 |
T |
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| Q |
105 |
gactcagccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtc |
204 |
Q |
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| T |
31128879 |
gactc-gccacaagaatcgttagggaaaagaaaaaagagtttgtagaaaaatcagtgttggaatcattggttattctaccacgacgcttgagttacgcac |
31128977 |
T |
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| Q |
205 |
attcagatgaatcttttgttgttgatattgtaat |
238 |
Q |
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| T |
31128978 |
attcagaagaatcttttgcagttgatattgtaat |
31129011 |
T |
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