View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_26 (Length: 299)
Name: NF21276_low_26
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 19 - 280
Target Start/End: Complemental strand, 2341312 - 2341051
Alignment:
| Q |
19 |
cctaatgaaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctttcaagaacacaagctttgaacagttctatt |
118 |
Q |
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| T |
2341312 |
cctaatgaaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctctcaagaacacaagctttgaacagttctgtt |
2341213 |
T |
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| Q |
119 |
tcttcacagaatggtagaaacctaattagccttctaccaacttcattaaatccaaacaacataccccaacttcttcaattcacatcaagaccagatattc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2341212 |
tcttcacagaatggtagaaacctaattagccttctaccaacttcattaaatccaaacaacataccccaacttcttcaattcacatcaagaccagatattc |
2341113 |
T |
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| Q |
219 |
aagatgaaaacttcagcagcatgtttcacaacattgatgagcatcagaacctctggccttgg |
280 |
Q |
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| T |
2341112 |
aagatgaaaacttcagcagcatgtttcacaacattgatgagcatcagaacctctggccttgg |
2341051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 3352029 - 3351957
Alignment:
| Q |
26 |
aaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctttcaagaacac |
98 |
Q |
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| T |
3352029 |
aaagaaaatgaaggttcttggagcaatggaagtgataacagctcagatatgaatctagacctttctagaacac |
3351957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 266
Target Start/End: Complemental strand, 3351909 - 3351846
Alignment:
| Q |
203 |
tcaagaccagatattcaagatgaaaacttcagcagcatgtttcacaacattgatgagcatcaga |
266 |
Q |
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|||||| ||||| |||||||||||| ||| ||| ||||||| |||||||||||||||| |||| |
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| T |
3351909 |
tcaagatcagatcttcaagatgaaagcttttgcaacatgtttaacaacattgatgagcagcaga |
3351846 |
T |
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