View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_29 (Length: 262)
Name: NF21276_low_29
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 35168287 - 35168522
Alignment:
| Q |
11 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
110 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35168287 |
cataggacctctcttgacgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
35168386 |
T |
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| Q |
111 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
210 |
Q |
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| T |
35168387 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
35168486 |
T |
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| Q |
211 |
tgagtccccaagctgaatccaattagctctagattt |
246 |
Q |
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| T |
35168487 |
tgagtccccaagctgaatccaattagctctagattt |
35168522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 30282285 - 30282518
Alignment:
| Q |
11 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
110 |
Q |
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|||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30282285 |
cataggacctcttttaacaatatttttgtccaccataggtaaagaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
30282384 |
T |
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| Q |
111 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
210 |
Q |
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| T |
30282385 |
aggttatgcttgtcaattctggtgtcatcttctgttatgaggaacttaatattattctgacatcttctttcctttgcataggcatggaaaaatttagtgt |
30282484 |
T |
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| Q |
211 |
t-gagtccccaagctgaatccaattagctctaga |
243 |
Q |
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| T |
30282485 |
tcgagtccccaagctgaatccaattagctctaga |
30282518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 33633268 - 33633501
Alignment:
| Q |
11 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
110 |
Q |
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|||||||||||| || | | ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633268 |
cataggacctcttttaacaacatttttgtccaccataggtaatgaatcaacggaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
33633367 |
T |
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| Q |
111 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
210 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
33633368 |
aggttatgcttgtcaattctggtgccatcttctgttatgaggaacttaatattattctgacatcttctttcctttgcataggcatggaaaaatttagtgt |
33633467 |
T |
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| Q |
211 |
t-gagtccccaagctgaatccaattagctctaga |
243 |
Q |
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| |||||||||||||||||||||||||||||||| |
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| T |
33633468 |
tcgagtccccaagctgaatccaattagctctaga |
33633501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 18263208 - 18263277
Alignment:
| Q |
30 |
atatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctc |
100 |
Q |
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||||||||||||||||||||| | |||||||| |||||||||||||||||| ||||||| ||||||||||| |
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| T |
18263208 |
atatttttgtccaccataggttatgaatcaacggaactacccatcaatttt-aatagaagcctctaatctc |
18263277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 243
Target Start/End: Original strand, 3940019 - 3940252
Alignment:
| Q |
11 |
cataggacctctcttgccgatatttttgtccaccataggtaacgaatcaacagaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
110 |
Q |
| |
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|||||||||||| || | ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3940019 |
cataggacctcttttaacaatatttttgtccaccataggtaatgaatcaacggaactacccatcaattttaaatagaaccctctaatctcctccttgatg |
3940118 |
T |
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| Q |
111 |
aggttatgcttgtcaattttggtgccatcttctgttatgaggaacttaatgatattctgacatcttctttcctttgcaaaggcatggaaaaattttgtgt |
210 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
3940119 |
aggttatgcttgtcaattctggtgtcatcttctgttatgaggaacttaatattattctgacatcttctttcctttgcataggcatggaaaaatttagtgt |
3940218 |
T |
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| Q |
211 |
t-gagtccccaagctgaatccaattagctctaga |
243 |
Q |
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| |||||||||||||||||||||||||||||||| |
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| T |
3940219 |
tcgagtccccaagctgaatccaattagctctaga |
3940252 |
T |
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