View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_3 (Length: 619)
Name: NF21276_low_3
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 77 - 604
Target Start/End: Complemental strand, 32297609 - 32297084
Alignment:
| Q |
77 |
aggtagttcggttgatgagttacgcaatagaacaatgaaaaagacttttaaaaaagaggttcatcgttcaaattctaaaaaccagcgcaattactaactt |
176 |
Q |
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| T |
32297609 |
aggtagtttggttgatgagttacgcaacagaacaattaaaaagagttttaagaaagagtttcatcgttcaaattctaaaaaccagcataattactaactt |
32297510 |
T |
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| Q |
177 |
attatgatttgattatnnnnnnnnttaactaaattcaaatgtcttatgatcggatttggatttcctgcactaagaaattttccaattacaaacaataaat |
276 |
Q |
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| T |
32297509 |
actatgatttgtttataagaaaa-ttaactgaattcaaatgtcttatgatcggatttggatttcctgcactaagaaattttccaattacaaacaataaat |
32297411 |
T |
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| Q |
277 |
gatctcggttggacgactcaatttacacaacaataaaaccaatgcacaacaatctcaaccgttaatcagaaatcaaacgtcgagccgttacgacaaattt |
376 |
Q |
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| T |
32297410 |
gatctcggttggacgattca-tttacacaacaataaaaccaatgtacaacaatctcaaccgttaatcagagatcaaacgtcgagccgttacgacaaattt |
32297312 |
T |
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| Q |
377 |
cccttatgaacaagttatacaaaggtttgattagattattgtacatgttttacaactcaaagccggttgtcagtgggccctaagcaggtaatcaatggga |
476 |
Q |
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| T |
32297311 |
cccttatgaacaagttatacaaaggtttgattagattattgtatatgttttacaactcaaagccggttgtcagtgggccctaagcaggtaatcaatggga |
32297212 |
T |
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| Q |
477 |
ccaggtgccacaaaatggtctttgtatctttgttggtgtaatgaatttatgtgatgtaagtgtatttagtagaataatattaatcgtaccttatatgaaa |
576 |
Q |
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| T |
32297211 |
ccaggtaccacaaaatggtctttgtatctttgttggtgtaatgaatttatgtgatgtaagtgtatttagtagaataataataatcgtaccttatatgaaa |
32297112 |
T |
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| Q |
577 |
agtataatctacatatacctttcttgat |
604 |
Q |
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| T |
32297111 |
agtataatctacatatacctttcttgat |
32297084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 32297662 - 32297720
Alignment:
| Q |
2 |
ataatggtttaaaagaataaccacccttaccaggatctatacaggaatcactttggatt |
60 |
Q |
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| T |
32297662 |
ataatggtttaaaagaataaccacccttaccaggatctatacaggaatcactttggatt |
32297720 |
T |
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