View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_30 (Length: 256)

Name: NF21276_low_30
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_30
NF21276_low_30
[»] chr8 (34 HSPs)
chr8 (71-240)||(5957841-5958010)
chr8 (71-211)||(10284551-10284691)
chr8 (71-224)||(37038506-37038659)
chr8 (65-211)||(8841346-8841492)
chr8 (73-211)||(34012218-34012356)
chr8 (72-224)||(40423864-40424016)
chr8 (73-224)||(504043-504194)
chr8 (73-211)||(12831087-12831225)
chr8 (73-224)||(14547949-14548100)
chr8 (73-240)||(15197344-15197511)
chr8 (73-240)||(23122519-23122686)
chr8 (71-240)||(43414501-43414670)
chr8 (91-199)||(9122237-9122345)
chr8 (108-211)||(1179897-1180000)
chr8 (65-179)||(40467772-40467886)
chr8 (91-199)||(44507027-44507135)
chr8 (71-163)||(42354508-42354600)
chr8 (71-240)||(15258849-15259018)
chr8 (91-210)||(14055532-14055651)
chr8 (71-210)||(32032765-32032904)
chr8 (67-199)||(17443877-17444009)
chr8 (73-168)||(30479396-30479491)
chr8 (71-240)||(15048101-15048270)
chr8 (72-210)||(16056322-16056460)
chr8 (66-167)||(4854778-4854879)
chr8 (111-167)||(20074902-20074958)
chr8 (73-169)||(24307715-24307811)
chr8 (125-240)||(10621061-10621176)
chr8 (71-158)||(32707923-32708010)
chr8 (85-158)||(42710228-42710301)
chr8 (73-169)||(34307298-34307394)
chr8 (132-209)||(38229470-38229547)
chr8 (108-210)||(16383418-16383520)
chr8 (127-165)||(42221601-42221639)
[»] chr4 (33 HSPs)
chr4 (71-240)||(50052348-50052517)
chr4 (73-224)||(6034071-6034222)
chr4 (71-217)||(41823916-41824062)
chr4 (71-224)||(29239913-29240066)
chr4 (71-224)||(50526091-50526244)
chr4 (73-224)||(41236374-41236525)
chr4 (73-224)||(48182971-48183122)
chr4 (73-230)||(24995029-24995186)
chr4 (71-211)||(31910232-31910372)
chr4 (100-211)||(480396-480507)
chr4 (71-181)||(48647646-48647756)
chr4 (73-224)||(42044289-42044440)
chr4 (109-239)||(23608247-23608377)
chr4 (119-211)||(3481694-3481786)
chr4 (100-224)||(11511411-11511535)
chr4 (71-175)||(40574855-40574959)
chr4 (71-199)||(28480188-28480316)
chr4 (71-199)||(28481063-28481191)
chr4 (71-199)||(28481938-28482066)
chr4 (111-199)||(29234205-29234293)
chr4 (85-213)||(54473467-54473595)
chr4 (91-215)||(56300105-56300229)
chr4 (71-170)||(18924415-18924514)
chr4 (71-210)||(50813812-50813951)
chr4 (72-210)||(17983664-17983802)
chr4 (71-169)||(19670636-19670734)
chr4 (71-224)||(29547879-29548032)
chr4 (71-158)||(55475284-55475371)
chr4 (71-224)||(47986235-47986387)
chr4 (67-199)||(29977937-29978069)
chr4 (71-158)||(29589660-29589747)
chr4 (72-158)||(47104637-47104723)
chr4 (124-199)||(53352539-53352614)
[»] chr1 (31 HSPs)
chr1 (71-224)||(51898603-51898756)
chr1 (73-229)||(41758827-41758983)
chr1 (73-224)||(2581942-2582093)
chr1 (73-240)||(27564657-27564824)
chr1 (73-224)||(48716204-48716355)
chr1 (69-239)||(49811445-49811615)
chr1 (73-221)||(43162-43310)
chr1 (73-211)||(37649238-37649376)
chr1 (71-240)||(32813258-32813427)
chr1 (71-229)||(44454001-44454163)
chr1 (80-224)||(50630485-50630629)
chr1 (73-224)||(9474798-9474949)
chr1 (85-224)||(38632255-38632394)
chr1 (73-211)||(47452242-47452380)
chr1 (73-224)||(26274459-26274607)
chr1 (71-224)||(45044480-45044633)
chr1 (73-224)||(8346309-8346461)
chr1 (71-208)||(11152298-11152435)
chr1 (100-224)||(3000346-3000470)
chr1 (100-224)||(38595181-38595305)
chr1 (117-224)||(44548342-44548449)
chr1 (71-210)||(5958920-5959059)
chr1 (71-181)||(6260940-6261050)
chr1 (123-208)||(48489343-48489428)
chr1 (71-210)||(47748483-47748622)
chr1 (71-210)||(50590920-50591059)
chr1 (69-167)||(23597009-23597107)
chr1 (118-211)||(13414801-13414894)
chr1 (66-158)||(41608408-41608500)
chr1 (66-224)||(37926353-37926511)
chr1 (69-139)||(34339966-34340035)
[»] scaffold0110 (1 HSPs)
scaffold0110 (71-239)||(8783-8951)
[»] chr5 (28 HSPs)
chr5 (71-199)||(31009040-31009168)
chr5 (68-224)||(35943809-35943965)
chr5 (73-211)||(33149560-33149698)
chr5 (85-211)||(36732876-36733002)
chr5 (73-240)||(2740285-2740452)
chr5 (73-224)||(18520806-18520957)
chr5 (73-224)||(35785226-35785377)
chr5 (73-224)||(40145434-40145585)
chr5 (78-224)||(13811679-13811825)
chr5 (73-240)||(14831825-14831992)
chr5 (71-198)||(21370057-21370184)
chr5 (71-184)||(2177431-2177544)
chr5 (71-240)||(15409530-15409699)
chr5 (71-167)||(20073436-20073532)
chr5 (72-184)||(36875537-36875645)
chr5 (71-224)||(6679725-6679878)
chr5 (71-175)||(26720592-26720696)
chr5 (71-175)||(26990341-26990445)
chr5 (71-158)||(9603906-9603993)
chr5 (71-166)||(33825244-33825339)
chr5 (71-210)||(2252088-2252227)
chr5 (71-210)||(3921185-3921324)
chr5 (71-158)||(39688817-39688904)
chr5 (112-240)||(28177786-28177914)
chr5 (125-224)||(42414276-42414375)
chr5 (73-137)||(31132448-31132512)
chr5 (88-158)||(39557454-39557524)
chr5 (71-163)||(6259921-6260013)
[»] chr3 (36 HSPs)
chr3 (71-211)||(8076433-8076573)
chr3 (71-199)||(30801653-30801781)
chr3 (73-224)||(33644227-33644378)
chr3 (73-224)||(49607441-49607592)
chr3 (73-224)||(53982038-53982189)
chr3 (73-211)||(9563039-9563177)
chr3 (71-179)||(35965702-35965810)
chr3 (73-224)||(17470432-17470583)
chr3 (73-224)||(54868817-54868968)
chr3 (69-210)||(1758377-1758515)
chr3 (71-165)||(20764835-20764929)
chr3 (71-211)||(33118770-33118911)
chr3 (100-224)||(52629327-52629451)
chr3 (71-241)||(26754705-26754875)
chr3 (73-211)||(31456729-31456867)
chr3 (71-213)||(35093623-35093765)
chr3 (71-240)||(35536637-35536806)
chr3 (73-211)||(36707350-36707484)
chr3 (71-240)||(51419280-51419449)
chr3 (69-205)||(48375624-48375760)
chr3 (71-166)||(14623759-14623854)
chr3 (69-155)||(43746435-43746521)
chr3 (71-240)||(11347842-11348011)
chr3 (71-224)||(41189684-41189837)
chr3 (71-158)||(24699875-24699961)
chr3 (69-166)||(13897973-13898070)
chr3 (71-210)||(36331249-36331388)
chr3 (71-240)||(26141450-26141621)
chr3 (71-166)||(8956847-8956942)
chr3 (71-210)||(42823152-42823291)
chr3 (71-157)||(45058473-45058559)
chr3 (71-169)||(47531947-47532045)
chr3 (100-165)||(21746137-21746202)
chr3 (73-155)||(25395256-25395337)
chr3 (66-175)||(25407062-25407171)
chr3 (141-197)||(48587081-48587137)
[»] chr2 (39 HSPs)
chr2 (80-224)||(33436029-33436173)
chr2 (73-240)||(17473031-17473198)
chr2 (66-240)||(20700826-20701000)
chr2 (73-224)||(19930742-19930893)
chr2 (73-240)||(7465657-7465824)
chr2 (73-224)||(28863482-28863633)
chr2 (73-211)||(10249304-10249442)
chr2 (73-221)||(13438373-13438521)
chr2 (73-211)||(4060725-4060863)
chr2 (73-224)||(40701505-40701656)
chr2 (73-211)||(32505570-32505708)
chr2 (73-208)||(28381577-28381712)
chr2 (73-211)||(38882733-38882874)
chr2 (71-166)||(44152012-44152107)
chr2 (71-240)||(2533135-2533303)
chr2 (91-224)||(9058507-9058640)
chr2 (71-240)||(36168847-36169016)
chr2 (71-240)||(38273063-38273231)
chr2 (100-197)||(30915517-30915614)
chr2 (71-240)||(40613822-40613991)
chr2 (71-224)||(42257220-42257373)
chr2 (66-208)||(3737986-3738128)
chr2 (71-199)||(3034903-3035031)
chr2 (5-68)||(8085628-8085694)
chr2 (71-178)||(3440052-3440159)
chr2 (107-210)||(17819960-17820063)
chr2 (71-210)||(38732395-38732534)
chr2 (72-210)||(2997408-2997546)
chr2 (111-240)||(41575148-41575278)
chr2 (111-240)||(33436222-33436351)
chr2 (71-230)||(13365374-13365533)
chr2 (142-240)||(5574479-5574577)
chr2 (71-165)||(17823874-17823968)
chr2 (69-155)||(41758683-41758769)
chr2 (71-208)||(26891424-26891561)
chr2 (71-210)||(43490162-43490301)
chr2 (69-158)||(21301418-21301507)
chr2 (71-224)||(45097655-45097808)
chr2 (146-224)||(27864731-27864809)
[»] chr6 (22 HSPs)
chr6 (73-224)||(11427645-11427796)
chr6 (73-224)||(17598581-17598732)
chr6 (71-240)||(31976259-31976428)
chr6 (73-224)||(22880580-22880731)
chr6 (73-224)||(32869705-32869856)
chr6 (73-225)||(29857853-29858005)
chr6 (87-220)||(23128063-23128196)
chr6 (85-221)||(15832607-15832743)
chr6 (68-203)||(30870062-30870196)
chr6 (71-158)||(31952950-31953037)
chr6 (71-167)||(31110681-31110777)
chr6 (101-212)||(6209415-6209526)
chr6 (71-169)||(4231630-4231728)
chr6 (102-224)||(31109351-31109473)
chr6 (71-210)||(15989962-15990101)
chr6 (71-210)||(30341280-30341419)
chr6 (108-198)||(946429-946519)
chr6 (69-166)||(28536406-28536503)
chr6 (71-210)||(15507944-15508083)
chr6 (107-240)||(12732493-12732626)
chr6 (108-240)||(9379669-9379801)
chr6 (71-115)||(22421999-22422043)
[»] scaffold1268 (1 HSPs)
scaffold1268 (71-224)||(849-1002)
[»] scaffold1267 (1 HSPs)
scaffold1267 (71-224)||(849-1002)
[»] chr7 (41 HSPs)
chr7 (71-199)||(41423734-41423862)
chr7 (73-240)||(4999436-4999603)
chr7 (73-240)||(19329853-19330020)
chr7 (73-240)||(32951415-32951582)
chr7 (73-183)||(11044246-11044356)
chr7 (71-240)||(35522887-35523056)
chr7 (108-224)||(3784022-3784138)
chr7 (73-240)||(40957718-40957885)
chr7 (78-240)||(19436114-19436276)
chr7 (71-240)||(35468775-35468944)
chr7 (73-197)||(8080305-8080429)
chr7 (71-210)||(16374744-16374883)
chr7 (100-211)||(38267080-38267191)
chr7 (73-199)||(38837269-38837395)
chr7 (71-240)||(21234412-21234581)
chr7 (71-175)||(31735953-31736057)
chr7 (71-205)||(12310950-12311084)
chr7 (71-224)||(8238240-8238393)
chr7 (95-224)||(35137560-35137689)
chr7 (71-240)||(46033721-46033890)
chr7 (108-199)||(3694419-3694510)
chr7 (71-210)||(38044238-38044377)
chr7 (71-169)||(22343443-22343541)
chr7 (117-210)||(36208214-36208307)
chr7 (71-199)||(27744229-27744357)
chr7 (109-211)||(7389429-7389531)
chr7 (71-169)||(26296726-26296824)
chr7 (69-166)||(18207264-18207361)
chr7 (73-240)||(3434573-3434730)
chr7 (69-224)||(39255842-39255996)
chr7 (70-169)||(41915823-41915922)
chr7 (72-165)||(1766702-1766795)
chr7 (100-158)||(32564375-32564433)
chr7 (142-224)||(36361904-36361986)
chr7 (71-210)||(2318161-2318302)
chr7 (69-210)||(7727947-7728088)
chr7 (122-158)||(10343534-10343570)
chr7 (69-165)||(45223128-45223224)
chr7 (71-210)||(40846033-40846172)
chr7 (71-134)||(46374744-46374807)
chr7 (142-220)||(36362057-36362135)
[»] scaffold0237 (1 HSPs)
scaffold0237 (73-225)||(4055-4207)
[»] scaffold0321 (1 HSPs)
scaffold0321 (100-224)||(10058-10182)
[»] scaffold0316 (2 HSPs)
scaffold0316 (71-155)||(17199-17283)
scaffold0316 (142-208)||(17097-17163)
[»] scaffold0018 (1 HSPs)
scaffold0018 (71-210)||(152539-152678)


Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 5958010 - 5957841
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||     
T  5958010 aaaatgttacataaacaccctttattctcatacacccttgtacacctcatgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcggg 5957911  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||  ||||||||||||||    
T  5957910 atccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatg 5957841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 10284551 - 10284691
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||     
T  10284551 aaaatgttacatagacaccttttattcttatacaaccttgtacaccccatgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgcggg 10284650  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
     ||||||||||||  |||||||||||||| ||| |||||||    
T  10284651 gtccacgtgactacgtgtcaaatttttgtgtgggtgtcaaa 10284691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 37038659 - 37038506
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||  |||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||     
T  37038659 aaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcggg 37038560  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  37038559 atccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 37038506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 65 - 211
Target Start/End: Original strand, 8841346 - 8841492
Alignment:
Q  65 caatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttg 164  Q
    ||||| ||||||||||||| ||||| |||||||| ||||||  ||||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||    
T  8841346 caatggaaaatgttacatagacaccatttattctcatacactcttgtacaccccatgcactaggaaaagagaagaggagaggaaagagaaagtgtgcttg 8841445  T
Q  165 tgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||  ||||||||||||  ||| | |||||||| ||| |||||||    
T  8841446 tgcggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaa 8841492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 34012218 - 34012356
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| ||||||||  |||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||    
T  34012218 aatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 34012317  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  |||||||||||||| ||| |||||||    
T  34012318 ccacgtgactacgtgtcaaatttttgtgtgggtgtcaaa 34012356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 40423864 - 40424016
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa 171  Q
    ||||| |||||| |||||||||||||  ||||||| |||||||||||||| | ||||||||||||||| ||||| |||||||||||| ||||||||||      
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 40423963  T
Q  172 tccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||| ||||||  ||||| |||||||| ||||||||||| | | ||||||||    
T  40423964 tccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 40424016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 504043 - 504194
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||| ||| ||||||||||  |    
T  504043 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgcggggt 504142  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  504143 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgcca 504194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 12831225 - 12831087
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  12831225 aatgatacatagacaccatttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 12831126  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  ||||| |||||||| ||| |||||||    
T  12831125 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaa 12831087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 14548100 - 14547949
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  14548100 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 14548001  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||||| | ||||||||    
T  14548000 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgcca 14547949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 15197511 - 15197344
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||| ||||||||  ||||||| |||||||||||||||| | |||||||| |||| ||||| |||||||||||| ||||||||||  |    
T  15197511 aatgatacatagacactttttattcccatacacccttgtacacctcatgcatttggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 15197412  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||  ||||| ||||||||    
T  15197411 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatg 15197344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 23122519 - 23122686
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||| | ||||| |||||||||||| |||| |||||  |    
T  23122519 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatgcggggt 23122618  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | |||||||| |||||  ||||||||    
T  23122619 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatg 23122686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 43414501 - 43414670
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||   ||||||| ||||||||| ||| || ||||||||||||||| ||||| |||||||||||| ||||||||||     
T  43414501 aaaatgttacatagacaccctttattgccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 43414600  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    ||||| ||||| |  ||| | |||||||| ||| ||||||| | | | ||||||| |||| |||||||||    
T  43414601 atccatgtgaccacgtgttagatttttgtgtgggtgtcaaagggtgtgttgccatctaaggatgtctatg 43414670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 199
Target Start/End: Complemental strand, 9122345 - 9122237
Alignment:
Q  91 tttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtca 190  Q
    |||||||  ||||||  ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||| ||||||    
T  9122345 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtca 9122246  T
Q  191 aatttttgt 199  Q
     ||||||||    
T  9122245 gatttttgt 9122237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 211
Target Start/End: Original strand, 1179897 - 1180000
Alignment:
Q  108 ttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgt 207  Q
    ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||  ||||| |||||||| ||| |||    
T  1179897 ttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggtgt 1179996  T
Q  208 caaa 211  Q
    ||||    
T  1179997 caaa 1180000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 40467886 - 40467772
Alignment:
Q  65 caatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttg 164  Q
    ||||| ||||||||||||| ||||||||||| |  ||| |  |||||||||| |||  |||||||||||||||||||||||||||||||||||| |||||    
T  40467886 caatggaaaatgttacatagacaccttttatccccataaatttttgtacaccccatagactaggaagagagaagatgagaggaaagagaaagtgtgcttg 40467787  T
Q  165 tgcggaatccacgtg 179  Q
    |||| | ||||||||    
T  40467786 tgcgaagtccacgtg 40467772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 199
Target Start/End: Original strand, 44507027 - 44507135
Alignment:
Q  91 tttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtca 190  Q
    |||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||  |||||| |||  ||||||||||||  |||||    
T  44507027 tttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtatgcttgtacggggtccacgtgactacgtgtca 44507126  T
Q  191 aatttttgt 199  Q
     ||||||||    
T  44507127 gatttttgt 44507135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 42354508 - 42354600
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgctt 163  Q
    ||||||||||||| ||||| |||||||| ||||||| || |||||| ||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  42354508 aaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgctt 42354600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 15258849 - 15259018
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||   |||||| |||||||| |  ||   |||||||||||||||| ||||||||||||||| || |||||||| |     
T  15258849 aaaatgttacatagacaccctttatttccatacacttttgtacatcctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagg 15258948  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||||||||| | |||||| |||||| | |||||||| |  ||| ||||||||| ||||| | ||||||    
T  15258949 gtccacgtgaccacatgtcagatttttatgtggatgtccagggatgtattgccatctaagagtatctatg 15259018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 14055532 - 14055651
Alignment:
Q  91 tttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg-cggaatccacgtgactatatgtc 189  Q
    |||||||| ||||||||||||| ||||||| || || ||||||||||||| |||||||||| |||||| |||||||  ||  |||||||||||| ||||     
T  14055532 tttattctcatacacctttgtatacctcattcattaagaagagagaagatcagaggaaagaaaaagtg-gcttgtgtaggggtccacgtgactacatgta 14055630  T
Q  190 aaatttttgtatggatgtcaa 210  Q
    | |||||||| ||||||||||    
T  14055631 agatttttgtgtggatgtcaa 14055651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 32032904 - 32032765
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| |||||||||||||| | |||||||||||||||  ||  |||||||||||||  ||||||| |     
T  32032904 aaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaaggagaaagagaaagtgtacttgtgcagg 32032805  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    |||||  || | | |||||| |||||||| ||||||||||    
T  32032804 atccatatggccacatgtcagatttttgtgtggatgtcaa 32032765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 17444009 - 17443877
Alignment:
Q  67 atgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||||||| ||||| |||||    ||||| | ||||||| |||||||||| |||||||||||||  ||| |||||||||||||   |||||    
T  17444009 atgaaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactgggaagagagaagagaagatgaaagagaaagtgtctttgtg 17443910  T
Q  167 cggaatccacgtgactatatgtcaaatttttgt 199  Q
     ||  ||||| |||||| |||||| ||||||||    
T  17443909 tggggtccacatgactacatgtcagatttttgt 17443877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 30479396 - 30479491
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||| |||||||||| |   ||||||| |||||||||||||| | |||||||||||||||  ||| |||||||||||||  ||||||||    
T  30479396 aatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 30479491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 15048101 - 15048270
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgaga-ggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||| ||| ||||| |||||||  ||||||| ||||||| | ||| || ||||||||||||||| ||||   |||||||||||| ||||||||||    
T  15048101 aaaatgttatatagacaccctttattccgatacacccttgtacatcccatacattaggaagagagaagaggagataaaaagagaaagtgtgcttgtgcgg 15048200  T
Q  170 aatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
      |||| ||| |||  ||||| |||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  15048201 ggtccatgtggctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatg 15048270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 16056322 - 16056460
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa 171  Q
    |||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||      
T  16056322 aaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 16056421  T
Q  172 tccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    ||||  || | | |||||| |||||||| ||| ||||||    
T  16056422 tccatatggccacatgtcagatttttgtgtgggtgtcaa 16056460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 167
Target Start/End: Original strand, 4854778 - 4854879
Alignment:
Q  66 aatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||| ||||||||||||| ||||  |||||||| ||| ||| ||||||| | ||| || ||| ||||||||||| ||||| |||||||||||| ||||||    
T  4854778 aatggaaaatgttacatagacactctttattctcatatacccttgtacatcccatacattagtaagagagaagaggagagaaaagagaaagtgtgcttgt 4854877  T
Q  166 gc 167  Q
    ||    
T  4854878 gc 4854879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 20074902 - 20074958
Alignment:
Q  111 tacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 167  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||||| ||||||||    
T  20074902 tacacctcatgaactaggaagagagaagagaagaggaaagagaaagtgtgcttgtgc 20074958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 24307715 - 24307811
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||    
T  24307715 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 24307811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 10621061 - 10621176
Alignment:
Q  125 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||| ||| | ||| |||  ||||| |||||||| ||| ||||||| | | |||| |||    
T  10621061 taggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtcaaagggtgtattacca 10621160  T
Q  225 tttaagaatgtctatg 240  Q
      |||| |||||||||    
T  10621161 cctaaggatgtctatg 10621176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 32707923 - 32708010
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||    
T  32707923 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtg 32708010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 158
Target Start/End: Original strand, 42710228 - 42710301
Alignment:
Q  85 acaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||| |||||||  ||||||| ||||||||| ||| || ||||||||||||||| ||||| ||||||||||||    
T  42710228 acaccctttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtg 42710301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 34307394 - 34307298
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||||| |||||||||| |   ||||||| ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||    
T  34307394 aatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 34307298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 38229547 - 38229470
Alignment:
Q  132 agagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtca 209  Q
    ||||||||  |||||||||||||| || |||||| | ||||||||||||| | |||||| |||||||| ||| |||||    
T  38229547 agagaagagaagaggaaagagaaaatgtgcttgtacagaatccacgtgaccacatgtcagatttttgtgtgggtgtca 38229470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 210
Target Start/End: Complemental strand, 16383520 - 16383418
Alignment:
Q  108 ttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgt 207  Q
    ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||  ||||  || | | |||||| |||||||| ||| |||    
T  16383520 ttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgt 16383421  T
Q  208 caa 210  Q
    |||    
T  16383420 caa 16383418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 165
Target Start/End: Complemental strand, 42221639 - 42221601
Alignment:
Q  127 ggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  42221639 ggaagagagaagatgagatgaaagagaaagtgtgcttgt 42221601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 50052348 - 50052517
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||     
T  50052348 aaaatgttacatagacaccctttattcccatacacctttgtacaccttatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 50052447  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     ||||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  50052448 gtccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 50052517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 6034222 - 6034071
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||    
T  6034222 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 6034123  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||||| |||||| |||||||| ||| ||||||| | | ||||||||    
T  6034122 ccacgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgcca 6034071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 71 - 217
Target Start/End: Complemental strand, 41824062 - 41823916
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||     
T  41824062 aaaatgttacatagacaccatttattctcatacacctttgtacacctcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggg 41823963  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatat 217  Q
     |||| |||||||  ||||| |||||||| ||| ||| ||| |||||    
T  41823962 gtccatgtgactacgtgtcagatttttgtgtgggtgttaaaggatat 41823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 29240066 - 29239913
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||| ||     
T  29240066 aaaatgttacatagacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgtggg 29239967  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     ||||||||||||  ||| | |||||||| ||||||||||||| | ||||||||    
T  29239966 gtccacgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgcca 29239913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 50526091 - 50526244
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||  |||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||| | |||||||||||    
T  50526091 aaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagcgtgcttgtgcgga 50526190  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||||| |  ||||| |||||||| ||| ||||||| | | ||||||||    
T  50526191 atccacgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 50526244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 41236525 - 41236374
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  41236525 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 41236426  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||||||||||| | | ||||||||    
T  41236425 ccacgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgcca 41236374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 48182971 - 48183122
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| || |||||||||||| ||||| |||||||||||| ||||||||||  |    
T  48182971 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 48183070  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  48183071 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 48183122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 230
Target Start/End: Original strand, 24995029 - 24995186
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| || |||||||||||| ||||| ||||||||| || ||||||||||  |    
T  24995029 aatgatacatagacaccctttattcccatacaccattgtacaccccatgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgcggggt 24995128  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaag 230  Q
    |||||||||||  |||||||||||| | ||| ||||||| | | ||||||||| ||||    
T  24995129 ccacgtgactacgtgtcaaatttttatgtgggtgtcaaagggtgtattgccatctaag 24995186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 31910372 - 31910232
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||  ||||||| | ||| || ||||||||||||||||||||| |||||||||||| ||||||||||     
T  31910372 aaaatgttacatagacaccatttattcccatacactcttgtacatcccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgcggg 31910273  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
     |||| ||| |||| ||||| |||||||| ||| |||||||    
T  31910272 gtccatgtggctatgtgtcagatttttgtgtgggtgtcaaa 31910232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 480396 - 480507
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||| |||  ||||||||||||  ||||| ||||||||    
T  480396 atacacctttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 480495  T
Q  200 atggatgtcaaa 211  Q
     ||| |||||||    
T  480496 gtgggtgtcaaa 480507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 48647646 - 48647756
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||| | |||||| ||||||| |||||||||    ||||||||||||||||||||| ||||||||||||||| || |||||||||||    
T  48647646 aaaatgttacatagacatcatttatttttatacatctttgtacattctatgcactaggaagagagaagaggagaggaaagagaaattgtgcttgtgcgga 48647745  T
Q  171 atccacgtgac 181  Q
     ||||||||||    
T  48647746 gtccacgtgac 48647756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 42044289 - 42044440
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| ||||||   ||||||| ||||||| | |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  42044289 aatgatacatagacaccctttatttccatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 42044388  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| |||  || ||| ||||||||    
T  42044389 ccacgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgcca 42044440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 239
Target Start/End: Complemental strand, 23608377 - 23608247
Alignment:
Q  109 tgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
    ||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||||||| ||| | ||||||||||  ||||| |||||||| ||| ||||    
T  23608377 tgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtcagatttttgtgtgggtgtc 23608278  T
Q  209 aaatgatatattgccatttaagaatgtctat 239  Q
    ||||| | ||||| ||| ||||  |||||||    
T  23608277 aaatggtgtattgtcatctaagggtgtctat 23608247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 211
Target Start/End: Complemental strand, 3481786 - 3481694
Alignment:
Q  119 atgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    ||||||||| ||||||||||||| |||||||||||||||| ||||||| ||  ||||||||||||| ||||| |||||||| ||| |||||||    
T  3481786 atgcactagaaagagagaagatgggaggaaagagaaagtgtgcttgtgtggggtccacgtgactatgtgtcagatttttgtgtgggtgtcaaa 3481694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 11511411 - 11511535
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||| |||||||||||||||| || ||||||||||||  |||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||| |    
T  11511411 atacacccttgtacacctcatgcattaagaagagagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttat 11511510  T
Q  200 atggatgtcaaatgatatattgcca 224  Q
     ||| ||||||| | | ||||||||    
T  11511511 gtgggtgtcaaagggtgtattgcca 11511535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 40574959 - 40574855
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||| |||||||||||||| ||||||| ||||||||| |||  | ||||||||||||||| ||||| |||||||||||| |||||| |||     
T  40574959 aaaatgttagatagacaccttttattctcatacacccttgtacaccccatatattaggaagagagaagaggagagaaaagagaaagtgtgcttgttcggg 40574860  T
Q  171 atcca 175  Q
    |||||    
T  40574859 atcca 40574855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 28480188 - 28480316
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||    ||||| | ||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | ||||| ||     
T  28480188 aaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggg 28480287  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
     ||||| |||||| |||||| ||||||||    
T  28480288 gtccacatgactacatgtcagatttttgt 28480316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 28481063 - 28481191
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||    ||||| | ||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | ||||| ||     
T  28481063 aaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggg 28481162  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
     ||||| |||||| |||||| ||||||||    
T  28481163 gtccacatgactacatgtcagatttttgt 28481191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 28481938 - 28482066
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||    ||||| | ||||||| |||||||||||||||||||||||| |||| ||| ||||||||| | ||||| ||     
T  28481938 aaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtgtggg 28482037  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
     ||||| |||||| |||||| ||||||||    
T  28482038 gtccacatgactacatgtcagatttttgt 28482066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 29234205 - 29234293
Alignment:
Q  111 tacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    |||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| ||||||||    
T  29234205 tacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgt 29234293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 54473467 - 54473595
Alignment:
Q  85 acaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactat 184  Q
    ||||| |||||||  ||||||| ||||||||  |||| | ||||||||||||||| ||||| ||||| |||||| ||||||||||  ||||||||||||     
T  54473467 acaccctttattcccatacacccttgtacactccatgtattaggaagagagaagaggagagaaaagataaagtgtgcttgtgcggggtccacgtgactac 54473566  T
Q  185 atgtcaaatttttgtatggatgtcaaatg 213  Q
     ||| | |||||||| ||| |||||||||    
T  54473567 gtgttagatttttgtgtgggtgtcaaatg 54473595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 215
Target Start/End: Original strand, 56300105 - 56300229
Alignment:
Q  91 tttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtca 190  Q
    |||||||| |||||   ||||||| ||||| || ||| ||||||||||| |||||||||||||||||| | |||||| | || ||  |||| | ||||||    
T  56300105 tttattctcatacaatcttgtacatctcatacattagaaagagagaagaggagaggaaagagaaagtgtgtttgtgcaggattcatatgaccacatgtca 56300204  T
Q  191 aatttttgtatggatgtcaaatgat 215  Q
     |||||||| |||||||||||||||    
T  56300205 gatttttgtgtggatgtcaaatgat 56300229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 18924415 - 18924514
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| || ||||||||||| | |||||||||||||||  ||| |||||||||||||  ||||||||||    
T  18924415 aaaatgttacatagacaccttttaattgcatacacccttttacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgga 18924514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 50813812 - 50813951
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||| |||||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  50813812 aaaatgttacatagacaccttttaattgcatacacccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 50813911  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     | ||  |||| | |||||| |||||||| ||| ||||||    
T  50813912 gttcatatgaccacatgtcagatttttgtgtgggtgtcaa 50813951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 17983664 - 17983802
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa 171  Q
    |||||||||||| |||| ||||| |   ||||||| |||||||||||||| | |||||||||||||||  ||| |||||||||||||  |||||||||      
T  17983664 aaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 17983763  T
Q  172 tccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    ||||  || | | |||||| |||||||| ||| ||||||    
T  17983764 tccatatggccacatgtcagatttttgtgtgggtgtcaa 17983802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Original strand, 19670636 - 19670734
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||    
T  19670636 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 19670734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 29547879 - 29548032
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||| ||||||  ||| |||||     
T  29547879 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagaaaaagtgtacttatgcggg 29547978  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||  || | | |||||| |||||||| ||| ||||||  ||| ||||||||    
T  29547979 atccatatggccacatgtcagatttttgtgtgggtgtcaagggatgtattgcca 29548032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 55475371 - 55475284
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||    
T  55475371 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtg 55475284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 47986387 - 47986235
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||| |||   ||||||| ||||||| | |||| | |||||||||||||||  | | |||||||||||||  |||||||||     
T  47986387 aaaatgttacatagacacctttaattgc-atacacccttgtacatcccatgtattaggaagagagaagagaataagaaagagaaagtgtacttgtgcggg 47986289  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     ||||  || | | |||||| |||||||| ||||||||||  ||| ||||||||    
T  47986288 gtccatatggccacatgtcagatttttgtgtggatgtcaagggatgtattgcca 47986235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 199
Target Start/End: Complemental strand, 29978069 - 29977937
Alignment:
Q  67 atgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||||||| | | ||||||||| |||||||  ||||||||| ||| || |||  ||||| ||||  ||| ||||||||||||| |||||||    
T  29978069 atgaaaaatgttacatagatatcttttattcctatacacacttgtacaccccatacattagtgagagaaaagagaagatgaaagagaaagtgtgcttgtg 29977970  T
Q  167 cggaatccacgtgactatatgtcaaatttttgt 199  Q
     ||  ||||  ||||||  ||||| ||||||||    
T  29977969 tggggtccatatgactacgtgtcagatttttgt 29977937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 29589660 - 29589747
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||| ||||||| |||||||||| |   ||||||  |||||||||||||| | |||||||||||||||  ||| |||||||||||||    
T  29589660 aaaatattacatagacaccttttaattgcatacactcttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtg 29589747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 47104723 - 47104637
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||| || |||| |||||||||  ||||   | |||||||||||||| || |||||||||||| |||| |||||||||||||    
T  47104723 aaatgttacgtagacactttttattctcgtacattctagtacacctcatgcattaagaagagagaagaggagatgaaagagaaagtg 47104637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 199
Target Start/End: Original strand, 53352539 - 53352614
Alignment:
Q  124 ctaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    |||||||||||||||| ||||| |||||||||||  ||||||||||  ||||| | ||||  ||||| ||||||||    
T  53352539 ctaggaagagagaagaggagagaaaagagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgt 53352614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 51898603 - 51898756
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||  |||||||| ||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||     
T  51898603 aaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcggg 51898702  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  51898703 atccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 51898756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 41758983 - 41758827
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  |    
T  41758983 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 41758884  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaa 229  Q
    ||| |||||||  ||||| |||||||| ||| ||||||| | | |||||||||||||    
T  41758883 ccatgtgactacgtgtcagatttttgtgtggttgtcaaagggtgtattgccatttaa 41758827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 2582093 - 2581942
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| |||||||||||||| | ||||||||||||||| ||||| ||| |||||||| ||||||||||  |    
T  2582093 aatgatacataaacaccctttattctaatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgcggggt 2581994  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  2581993 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 2581942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 27564657 - 27564824
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  27564657 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 27564756  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||| ||  ||||| |||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  27564757 ccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatg 27564824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 48716204 - 48716355
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| || || ||||| |||||| ||||||||||  |    
T  48716204 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggt 48716303  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||||||||||||| | ||||||||    
T  48716304 ccacgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgcca 48716355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 49811445 - 49811615
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||||| ||||| |||||||| ||||||| |||| |||| ||| || ||||||||||||||| ||||| |||||||||||| |||||||||    
T  49811445 gaaaaatgttacatagacaccctttattctcatacacccttgtgcaccacatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 49811544  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctat 239  Q
    || || |  || |||  ||||| |||||||| ||||||||||||| | ||||| ||  |||| ||||||||    
T  49811545 gagtctatatggctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctat 49811615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 43310 - 43162
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| | ||| |||||||||||||||  ||||||||| |||||| ||| |||||||| || ||||| |||||||||||| ||||||||||| |    
T  43310 aatgatacatagataccctttattcttatacactcttgtacaccccatgcattagaaagagagaggaggagagaaaagagaaagtgtgcttgtgcggagt 43211  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattg 221  Q
    |||||||||||  ||||| |||||||| ||| ||||||| ||| |||||    
T  43210 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattg 43162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 37649376 - 37649238
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||| ||||||| |||||||||||||    
T  37649376 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagggaaagtgtgcttgtgcggaat 37649277  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
     |||||||| |  ||||| |||||||| ||| |||||||    
T  37649276 tcacgtgaccacgtgtcagatttttgtgtgggtgtcaaa 37649238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 32813427 - 32813258
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||| ||||||||| ||| || ||||||||||||||| ||||| |||||||||||| ||||||||||     
T  32813427 aaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 32813328  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||| ||||| |  ||||| |||||||| ||| ||| ||| | | ||||||||  |||| |||||||||    
T  32813327 gtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatg 32813258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 229
Target Start/End: Complemental strand, 44454163 - 44454001
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtac----acctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||| ||||| |||||||||||||||| || |||    ||| |||||| ||||||||||||||||||||||||||| |||||| |||||||    
T  44454163 aaaatgttacataaacaccatttattcttatacacccttatactctgaccccatgcattaggaagagagaagatgagaggaaagaaaaagtgtgcttgtg 44454064  T
Q  167 cggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaa 229  Q
     || |||||||| || | |||||| |||||||| ||| | ||||  ||| |||||||| ||||    
T  44454063 tgggatccacgtaaccacatgtcagatttttgtgtgggtatcaagagatgtattgccacttaa 44454001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 50630629 - 50630485
Alignment:
Q  80 catatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtg 179  Q
    |||| ||||| |||||||| ||||||| |||||||||  ||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||    
T  50630629 catagacaccatttattctcatacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtg 50630530  T
Q  180 actatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||  ||||| |||||||| ||| |  |||| ||| ||||||||    
T  50630529 actacgtgtcagatttttgtgtgggtaacaaaggatgtattgcca 50630485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 9474798 - 9474949
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||  |||||||| ||||||| ||||||| | |||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  |    
T  9474798 aatgatacatagacactctttattctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 9474897  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  9474898 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 9474949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 224
Target Start/End: Original strand, 38632255 - 38632394
Alignment:
Q  85 acaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactat 184  Q
    ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| ||||| ||||| |||||| ||||||||||  ||||||||||||     
T  38632255 acaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactac 38632354  T
Q  185 atgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     ||||| |||||||| ||||||| ||| | | ||||||||    
T  38632355 gtgtcagatttttgtgtggatgttaaaaggtgtattgcca 38632394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 47452242 - 47452380
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||  |||||||  ||||| | ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||    
T  47452242 aatgatacatagacactctttattcccatacatccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 47452341  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  ||| | |||||||| ||| |||||||    
T  47452342 ccacgtgactacgtgttagatttttgtgtgggtgtcaaa 47452380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 26274607 - 26274459
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| |||| || |||||||| |||||||||||||||   ||| ||||| ||||||  ||||||| | ||    
T  26274607 aatgatacatagacaccctttattcccatacacccttgtgcatctcatgcattaggaagagagaaga---gagaaaagaaaaagtgtacttgtgcaggat 26274511  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||| ||||| |||||| | ||||||||||||||| ||||||||    
T  26274510 ccacgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgcca 26274459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 45044480 - 45044633
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    |||||||||| || ||| | |||||||| ||||||| ||||||||| ||| || |||||||||||||||  |||| ||||||||| || | ||||||||     
T  45044480 aaaatgttacgtagacatcatttattctcatacacccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaaatgtgtttgtgcggg 45044579  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     |||| ||| ||| |||||| |||||||||||| ||||||||| | ||||||||    
T  45044580 gtccatgtggctacatgtcagatttttgtatgggtgtcaaatggtgtattgcca 45044633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 8346309 - 8346461
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaa-gatgagaggaaagagaaagtgcgcttgtgcggaa 171  Q
    |||| |||||| | ||| |||||||| ||||||||||||||||  |||||| |||||||||| || || ||||| |||||||||||| |||||||| |      
T  8346309 aatgatacataaataccatttattctcatacacctttgtacactccatgcattaggaagagaaaaagaggagagaaaagagaaagtgtgcttgtgcaggg 8346408  T
Q  172 tccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||||||  ||||| |||||||| ||| ||||||||| | ||||||||    
T  8346409 tccacgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgcca 8346461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 11152298 - 11152435
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||| ||||| |||||||| ||||| | || |||||| |||||||| ||||||||||||| ||||||||| |||||| | ||||||||||     
T  11152298 aaaatgttatatagacaccatttattctcatacatccttctacaccccatgcactgggaagagagaagaggagaggaaaaagaaagcgtgcttgtgcggg 11152397  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
     || || ||||||  ||||| |||||||| ||||||||    
T  11152398 gtctacatgactacgtgtcagatttttgtgtggatgtc 11152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 3000470 - 3000346
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||| ||||||||| |||  | ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| ||||||||    
T  3000470 atacacccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 3000371  T
Q  200 atggatgtcaaatgatatattgcca 224  Q
     ||| ||||||| | | ||||||||    
T  3000370 gtgggtgtcaaagggtgtattgcca 3000346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 38595305 - 38595181
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||| ||||||||| |||  | ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| ||||||||    
T  38595305 atacacccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 38595206  T
Q  200 atggatgtcaaatgatatattgcca 224  Q
     ||| ||||||| | | ||||||||    
T  38595205 gtgggtgtcaaagggtgtattgcca 38595181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 117 - 224
Target Start/End: Original strand, 44548342 - 44548449
Alignment:
Q  117 tcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgata 216  Q
    ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| | ||||||| |     
T  44548342 tcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtatcaaatggtg 44548441  T
Q  217 tattgcca 224  Q
    ||||||||    
T  44548442 tattgcca 44548449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 5958920 - 5959059
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||| ||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  5958920 aaaatgttacatagacacattttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 5959019  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  |||| | |||||| |||||||| ||| ||||||    
T  5959020 gtccatatgaccacatgtcagatttttgtgtgggtgtcaa 5959059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 181
Target Start/End: Complemental strand, 6261050 - 6260940
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||| | |||||||||||||||||  ||  ||||| ||||||||||| |||| |||| ||||| || |||| |||||     
T  6261050 aaaatgttacatacacaccatttattttcatacacctttgtacaccctatatactagaaagagagaagaggagaagaaatagaaaatgtgcttatgcggg 6260951  T
Q  171 atccacgtgac 181  Q
     ||||||||||    
T  6260950 gtccacgtgac 6260940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 48489428 - 48489343
Alignment:
Q  123 actaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
    ||||||||||||||||| | ||| ||| ||||| || |||||||||| ||||||||||| | |||||| |||||||| ||||||||    
T  48489428 actaggaagagagaagaggtgagaaaatagaaaatgtgcttgtgcgggatccacgtgaccacatgtcagatttttgtgtggatgtc 48489343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 47748622 - 47748483
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||  ||||||||| |||| | |||||||||||||||  ||| ||||||||||||   |||||||||     
T  47748622 aaaatgttacatagacaccttttaattgcatacactcttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcggg 47748523  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    |||||  || | | |||||| |||||| ||||| ||||||    
T  47748522 atccatatggccacatgtcagatttttatatgggtgtcaa 47748483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 50590920 - 50591059
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| | |||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  50590920 aaaatgttacatagataccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 50591019  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  50591020 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 50591059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 23597009 - 23597107
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 167  Q
    ||||||||||||||| |||  ||||||||| ||||| | ||| |||||||||| |||||||| |||||| | ||||| ||||| |||||| | ||||||    
T  23597009 gaaaaatgttacatagacattttttattctcatacatccttggacacctcatgaactaggaatagagaataggagagaaaagataaagtgtgtttgtgc 23597107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 211
Target Start/End: Complemental strand, 13414894 - 13414801
Alignment:
Q  118 catgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||| |||||||||||||||||| || ||||||||| || ||||||| ||  ||||||||||||  ||| | |||||||| ||| |||||||    
T  13414894 catgcattaggaagagagaagatgatagaaaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgtgggtgtcaaa 13414801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 158
Target Start/End: Original strand, 41608408 - 41608500
Alignment:
Q  66 aatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    |||| ||||||||||||| |||||||||| |   ||||||| |||||||||  ||| | |||||||||||||||  ||| |||||||||||||    
T  41608408 aatggaaaatgttacataaacaccttttaattgcatacacccttgtacaccctatgtattaggaagagagaagagaagaagaaagagaaagtg 41608500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 224
Target Start/End: Original strand, 37926353 - 37926511
Alignment:
Q  66 aatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||| ||||| ||| ||| ||||| |||||||  ||||| | ||||||||| ||| || |||||||||||||||  |||| ||||||||||||  |||||    
T  37926353 aatggaaaatattatatagacaccatttattcacatacatccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtacttgt 37926452  T
Q  166 gcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     ||| ||||| ||| | |  ||||| |||||| | ||| ||| ||| ||| ||||||||    
T  37926453 acgggatccatgtggccacgtgtcagatttttatgtgggtgttaaaagatgtattgcca 37926511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 34339966 - 34340035
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaaga 139  Q
    ||||||||||||||| |||||||||||| ||  ||||  |||||||||  ||||||| |||||||||||||    
T  34339966 gaaaaatgttacatagacaccttttatt-ttcaacactcttgtacaccctatgcacttggaagagagaaga 34340035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 8783 - 8951
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| |||  | ||||||||||||||||| ||||||||||||| ||  |||||| ||     
T  8783 aaaatgttacatagacaccttttattcttatacacccttgtacaccccatatattaggaagagagaagatgggaggaaagagaaaatgtacttgtgtggg 8882  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctat 239  Q
     ||||||||||||| |||||||||||||| | ||||||||||  | ||||| || ||||| ||||||||    
T  8883 gtccacgtgactatgtgtcaaatttttgtgtagatgtcaaatagtgtattgtcacttaaggatgtctat 8951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 31009168 - 31009040
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||| |||||||| ||||||||||     
T  31009168 aaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgcggg 31009069  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
    |||||||||||||  ||||| ||||||||    
T  31009068 atccacgtgactacgtgtcagatttttgt 31009040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 68 - 224
Target Start/End: Original strand, 35943809 - 35943965
Alignment:
Q  68 tgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 167  Q
    |||||||||||||||| |||| |||||||   ||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||| |||||||     
T  35943809 tgaaaaatgttacatagacacattttatttccatacacccttgtacaccccatgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtgt 35943908  T
Q  168 ggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    || |||||||| ||||  ||||| |||||||| ||| ||||||||||| ||||||||    
T  35943909 gggatccacgtaactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgcca 35943965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 33149560 - 33149698
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| ||||||||  |||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||    
T  33149560 aatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 33149659  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  |||||||||||||| ||| |||||||    
T  33149660 ccacgtgactacgtgtcaaatttttgtgtgggtgtcaaa 33149698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 211
Target Start/End: Original strand, 36732876 - 36733002
Alignment:
Q  85 acaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactat 184  Q
    ||||| |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |||||||||||||    
T  36732876 acaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactat 36732975  T
Q  185 atgtcaaatttttgtatggatgtcaaa 211  Q
     ||||| |||||||| ||| |||||||    
T  36732976 gtgtcagatttttgtgtgggtgtcaaa 36733002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 2740452 - 2740285
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||| | |||||| ||||||||||||||  ||||| |||||||||||| |||||||||| ||    
T  2740452 aatgatacatagacaccctttattcccatacacccttgtacatcccatgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgcgggat 2740353  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  2740352 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 2740285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 18520806 - 18520957
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||| | ||||||| |||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||||||||||  |    
T  18520806 aatgatacatagacaccctttattttcatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggt 18520905  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  18520906 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 18520957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 35785377 - 35785226
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||||||||||   ||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||| | |||||||| ||    
T  35785377 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcgggat 35785278  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||| ||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  35785277 ccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgcca 35785226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 40145585 - 40145434
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||| ||| ||||||||||| |||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  40145585 aatgatacatagacaccctttattctcatatacccttgtacacctcgtgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 40145486  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||||||| ||| | | ||||||||    
T  40145485 ccacgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgcca 40145434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 13811825 - 13811679
Alignment:
Q  78 tacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacg 177  Q
    |||||| ||||| |||||||  ||||| | ||||||| | |||||| ||||||||||||||| |||||  ||||||||||| ||||||||||  ||||||    
T  13811825 tacatagacaccatttattcccatacatccttgtacatcccatgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtgcggggtccacg 13811726  T
Q  178 tgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||  ||||| |||||||| ||| ||||||||||| ||||||||    
T  13811725 tgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgcca 13811679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 14831992 - 14831825
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||||| ||||||||||||||| ||||  ||| |||||||| |||||||||| ||    
T  14831992 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgtgcgggat 14831893  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||| | ||| ||||||| | | ||||||||  ||||| ||||||||    
T  14831892 ccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatg 14831825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 198
Target Start/End: Complemental strand, 21370184 - 21370057
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||| | ||||||||||||||| || ||  |||||||||| |||||||||||||||||||||| || | ||||||||     
T  21370184 aaaatgttacataaacaccctttattttcatacacctttgtacatcttatatactaggaagaaagaagatgagaggaaagagaaaatgtgtttgtgcggg 21370085  T
Q  171 atccacgtgactatatgtcaaatttttg 198  Q
     |||||||||| | |||||| |||||||    
T  21370084 gtccacgtgaccacatgtcagatttttg 21370057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 184
Target Start/End: Complemental strand, 2177544 - 2177431
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||| | |||| ||||||||| ||||||| ||||||| |  ||||||||||||||||||||| ||||||||||||||| || ||||||| ||     
T  2177544 aaaatgttacagagacacattttattctcatacacccttgtacatccaatgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgtggg 2177445  T
Q  171 atccacgtgactat 184  Q
    ||||||||| ||||    
T  2177444 atccacgtgtctat 2177431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 15409530 - 15409699
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||| ||||||||| ||| || ||||||||||||||| ||||| ||||||| |||| ||||||||||     
T  15409530 aaaatgttacataaacaccctttattcgcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagagagtgtgcttgtgcggg 15409629  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||| ||| |||  ||||| |||||||| ||| |||||||  || ||||| ||  |||| |||||||||    
T  15409630 gtccatgtggctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatg 15409699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 20073436 - 20073532
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 167  Q
    ||||||||| ||| |||  ||||||||| ||||||||||||| | |||||| ||||||||||||||||| ||||||||| |||||||| ||||||||    
T  20073436 aaaatgttagatagacattttttattctcatacacctttgtaaatctcatgaactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgc 20073532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 36875537 - 36875645
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa 171  Q
    |||||||||||| ||||| ||||||    | |||| ||||||||| |||| | ||||||||||||||| ||||  |||||||||||| |||||||||| |    
T  36875537 aaatgttacatagacaccatttatt----tccacccttgtacaccccatgtattaggaagagagaagaggagaaaaaagagaaagtgtgcttgtgcggga 36875632  T
Q  172 tccacgtgactat 184  Q
    |||||||||||||    
T  36875633 tccacgtgactat 36875645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 6679878 - 6679725
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||| | |||||| | ||||||| |||||||||  || || ||||||||||||||| ||||| ||||||||| || | ||||||||     
T  6679878 aaaatgttacatagacatcatttattgtcatacacccttgtacaccctatacattaggaagagagaagaggagagaaaagagaaaatgtgtttgtgcggg 6679779  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     |||| ||||| |  ||||| |||||||| ||| ||||||| | | ||||||||    
T  6679778 gtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgcca 6679725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 26720696 - 26720592
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||| ||| | |||||||| ||||||| | ||||||| ||| || |||||||||||||||  |||| |||||||||||| ||||||||||     
T  26720696 aaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcggg 26720597  T
Q  171 atcca 175  Q
    |||||    
T  26720596 atcca 26720592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 26990445 - 26990341
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||| ||| | |||||||| ||||||| | ||||||| ||| || |||||||||||||||  |||| |||||||||||| ||||||||||     
T  26990445 aaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtgcggg 26990346  T
Q  171 atcca 175  Q
    |||||    
T  26990345 atcca 26990341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 158
Target Start/End: Complemental strand, 9603993 - 9603906
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    |||||||||| || ||||| |||||||| ||||||||||||||| | || |||||| |||||||||||| || | |||||||||||||    
T  9603993 aaaatgttacgtagacaccatttattctcatacacctttgtacatcccaagcactaagaagagagaagacgaaatgaaagagaaagtg 9603906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 33825244 - 33825339
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||  ||||| |||||||| ||||| | || |||||| ||||||||||||||||||||||  |||  |||||||||||| |||||||    
T  33825244 aaaatgttacattgacaccatttattctcatacagccttctacaccccatgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtg 33825339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 2252088 - 2252227
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  2252088 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 2252187  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  2252188 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 2252227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 3921185 - 3921324
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  3921185 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 3921284  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  3921285 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 3921324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 39688817 - 39688904
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||||| |||||||||| |   |||||||||||||||||  ||| | |||||||||||||||  ||| |||||||||||||    
T  39688817 aaaatgttacatagacaccttttaattgcatacacctttgtacaccctatgtattaggaagagagaagaaaagaagaaagagaaagtg 39688904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 112 - 240
Target Start/End: Complemental strand, 28177914 - 28177786
Alignment:
Q  112 acacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    ||||| ||| || ||||||||| ||||| ||||| |||||||||||| | ||||||||  |||| ||||| |  ||||| |||||||| ||| |||||||    
T  28177914 acaccccatacattaggaagagggaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtcaaa 28177815  T
Q  212 tgatatattgccatttaagaatgtctatg 240  Q
     | | ||||||||  |||| |||||||||    
T  28177814 gggtgtattgccacctaaggatgtctatg 28177786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 224
Target Start/End: Original strand, 42414276 - 42414375
Alignment:
Q  125 taggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||||||||| || || ||||| |||||| ||||||||||  ||||| ||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  42414276 taggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 42414375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 31132512 - 31132448
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaa 137  Q
    |||| |||||| ||||| |||||| | ||||||| |||||||||||||||| ||| |||||||||    
T  31132512 aatgatacataaacaccctttattttcatacacccttgtacacctcatgcattagaaagagagaa 31132448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 158
Target Start/End: Original strand, 39557454 - 39557524
Alignment:
Q  88 ccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||| ||| | |  ||||||||||||| | ||||||||||||||| ||||  ||||||||||||    
T  39557454 ccttttattctcatagatccatgtacacctcatgtattaggaagagagaagaggagataaaagagaaagtg 39557524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 6259921 - 6260013
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgctt 163  Q
    ||||||||||||| | | | ||||||| |||||||  ||||||| | ||| || |||  |||||||||| |||| ||||||||||||| ||||    
T  6259921 aaaatgttacatagatatcctttattcctatacacacttgtacatcccatacattagtgagagagaagaggagatgaaagagaaagtgtgctt 6260013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 71 - 211
Target Start/End: Complemental strand, 8076573 - 8076433
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| |||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||     
T  8076573 aaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 8076474  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
     ||||||||||||  ||| | |||||||| ||| |||||||    
T  8076473 gtccacgtgactacgtgttagatttttgtgtgggtgtcaaa 8076433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 30801653 - 30801781
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||| ||     
T  30801653 aaaatgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgtgtggg 30801752  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
     ||||  |||||| |||||| ||||||||    
T  30801753 gtccatatgactacatgtcatatttttgt 30801781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 33644378 - 33644227
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| || |||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  33644378 aatgatacatagacaccctttattcccatacacccttatacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 33644279  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  33644278 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 33644227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 49607592 - 49607441
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| |||||||| ||||||| |||||||||| |||| ||||| |||||||||||| ||||||| || ||    
T  49607592 aatgatacatagacaccctttattcccatacacccttgtacacgtcatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggat 49607493  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  49607492 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 49607441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 53982189 - 53982038
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  53982189 aatgatacatagacaccctttattcccatacaaccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 53982090  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  53982089 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 53982038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 9563177 - 9563039
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| | ||| |||||||  ||||||||||||||| |||||||| ||||||||||||||| ||||| | |||||||||| | |||||| | ||    
T  9563177 aatgatacatagataccctttattcccatacacctttgtacaactcatgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgcaggat 9563078  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  ||||| |||||| |||||||||||||    
T  9563077 ccacgtgactacgtgtcagatttttatatggatgtcaaa 9563039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 71 - 179
Target Start/End: Original strand, 35965702 - 35965810
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||||||| ||||||| |||||||||||||| | || ||| ||| |||| |||||||||||||||||| |||||||| |     
T  35965702 aaaatgttacatagacaccttttattctcatacacccttgtacacctcatgaattaagaaaagaaaagaggagaggaaagagaaagtgtgcttgtgcagg 35965801  T
Q  171 atccacgtg 179  Q
    |||||||||    
T  35965802 atccacgtg 35965810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 17470583 - 17470432
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| |||||  |||||||| | |||||| ||||||||||||||||||||| |||||||||||| ||||||| ||  |    
T  17470583 aatgatacatagacaccatttattctcatacatatttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgtggggt 17470484  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||| ||| | | ||||||||    
T  17470483 ccacgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgcca 17470432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 54868817 - 54868968
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||||||||||   ||||||| |||||||||  ||||| ||||||||||||||||||||| |||||||||||| | ||||||||  |    
T  54868817 aatgatacatagacaccttttatttccatacacccttgtacaccctatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 54868916  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||| ||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  54868917 ccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgcca 54868968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 1758377 - 1758515
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||||| ||||  |||||||  ||||||||||||||||| |||||| ||||||||||||||| |||| |||||||||| || | ||||| |    
T  1758377 gaaaaatgttacataaacactgtttattc--atacacctttgtacacc-catgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtg 1758473  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    || ||||||| || |||||||| |||||||| ||| ||||||    
T  1758474 gagtccacgtaaccatatgtcagatttttgtgtgggtgtcaa 1758515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 20764835 - 20764929
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||| ||| || ||||||||||||||||||||| |||||||||||| ||||||    
T  20764835 aaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgt 20764929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 211
Target Start/End: Original strand, 33118770 - 33118911
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaag-atgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    |||||||||| || ||||| ||||||   ||||||| ||||||||| ||||||||||| ||||||||| | |||||||||||||||||| | || || ||    
T  33118770 aaaatgttacgtagacaccctttatttccatacacccttgtacaccccatgcactagggagagagaaggaggagaggaaagagaaagtgtgtttctgagg 33118869  T
Q  170 aatccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
     |||||||||||||  |||||||||||||| ||| |||||||    
T  33118870 gatccacgtgactacgtgtcaaatttttgtgtgggtgtcaaa 33118911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 100 - 224
Target Start/End: Complemental strand, 52629451 - 52629327
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||| ||||||| | |||||| ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| ||||||||    
T  52629451 atacacccttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 52629352  T
Q  200 atggatgtcaaatgatatattgcca 224  Q
     ||| ||||||| | | ||||||||    
T  52629351 gtgggtgtcaaagggtgtattgcca 52629327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 26754875 - 26754705
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||  ||||||   |||||||||||||||||  ||   |||||||||||||||| ||||||||||||||| || ||||||||||     
T  26754875 aaaatgttacatagacactctttatttccatacacctttgtacaccctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggg 26754776  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatga 241  Q
     |||| ||||| | |||||| |||||||| |||||||| || | | ||||||||  ||||  |||||||||    
T  26754775 gtccatgtgaccacatgtcagatttttgtgtggatgtccaagggtgtattgccacctaagggtgtctatga 26754705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 31456867 - 31456729
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  || |||| ||||||||| |||||| |||||||||| |||| ||||| |||||||||||| ||||||||||  |    
T  31456867 aatgatacataaacaccctttattcccatgcacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 31456768  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||| ||||||  ||||| |||||||| ||| |||||||    
T  31456767 ccacatgactacgtgtcagatttttgtgtgggtgtcaaa 31456729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 71 - 213
Target Start/End: Complemental strand, 35093765 - 35093623
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    |||||||||| || ||| | |||||||| ||||||||||||||| |||||||||||||||||||||| |  ||| | ||||||||||| ||||||  |||    
T  35093765 aaaatgttacctagacatcatttattctcatacacctttgtacatctcatgcactaggaagagagaaaaaaagatgcaagagaaagtgtgcttgtatgga 35093666  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatg 213  Q
     | ||| |||| | |||||| |||||||  |||||||||||||    
T  35093665 gttcacatgaccacatgtcagatttttgcgtggatgtcaaatg 35093623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 35536806 - 35536637
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||| || |||||| ||||||||||||||||||||||  ||| ||||||| ||||| |||||||        
T  35536806 aaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgtaag 35536707  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     ||||| |||| |  ||||| |||||| | ||| ||||||||| | ||||||||  |||| |||||||||    
T  35536706 gtccacatgaccacgtgtcacatttttatgtgggtgtcaaatggtgtattgccacataaggatgtctatg 35536637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 36707350 - 36707484
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||||||||||||  |||||   |||||||||||||||| ||||||||||||||| ||||| ||||||||||||    || |||| ||    
T  36707350 aatgatacatagacaccttttattcccatacattcttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtg----tgcgcgggat 36707445  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||| ||||  ||||| |||||||| |||||||||||    
T  36707446 ccacgtaactacgtgtcagatttttgtgtggatgtcaaa 36707484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 51419280 - 51419449
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||||||||||   ||||||| ||||||||| ||| || ||||||||||||| | ||||| |||||||||||| ||||||||||     
T  51419280 aaaatgttacataaacaccttttatttccatacacccttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgcttgtgcggg 51419379  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     || | ||| | |  ||||| |||||||| ||| ||| ||| ||| ||||| ||| |||| |||||||||    
T  51419380 gtctatgtggccacgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatg 51419449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 69 - 205
Target Start/End: Original strand, 48375624 - 48375760
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||||| ||||| ||||||   ||||| |||||||||||  ||   |||||||||||||||| ||||||||||||||| || |||||||||    
T  48375624 gaaaaatgttacatagacaccctttatttccatacatctttgtacaccctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcg 48375723  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggat 205  Q
    |  |||| ||||| | | |||| ||||||||||||||    
T  48375724 gggtccatgtgaccacacgtcagatttttgtatggat 48375760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 14623759 - 14623854
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||| ||||| |||||||| ||||| | || ||||||||||||||||| |||||||||||  ||| ||||||||||||| |||||||    
T  14623759 aaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtg 14623854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 43746521 - 43746435
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaa 155  Q
    ||||||||||||||| ||||| ||| || | ||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  43746521 gaaaaatgttacataaacaccctttgttgtcatacacccttgtacacctcatgcactaggaagaaagaagaggagatgaaagagaaa 43746435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 11347842 - 11348011
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    |||||| |||||| ||||| |||||||  ||||||| || |||||| ||| || ||||||||||||||| ||||| |||||||||||| |||| ||| |     
T  11347842 aaaatggtacatagacaccctttattcccatacacccttatacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttatgcagg 11347941  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||| ||| | |  ||||| |||||||| ||||||||||| ||| ||||| ||  |||| |||||||||    
T  11347942 gtccatgtggccacgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatg 11348011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 41189684 - 41189837
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||   ||||||  ||||||||  ||| || |||||||| |||||| ||||| |||||||||||| ||||||||||     
T  41189684 aaaatgttacatagacaccctttatttccatacactcttgtacactccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggg 41189783  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     |||| ||| | |  |||||||||||| | ||| ||||||||||| ||||||||    
T  41189784 gtccatgtggccacgtgtcaaatttttatgtgggtgtcaaatgatgtattgcca 41189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 24699875 - 24699961
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||||| ||| |||||||||| ||||| |||  ||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  24699875 aaaatgttacatagacatcttttattctcatacatctta-tacacctcataaactaggaagagagaagaggagaggaaagagaaagtg 24699961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 13897973 - 13898070
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||| ||| ||||| |||||||| |||||| ||| |||||| ||| ||||||| ||||||||||  ||| ||||||||||||| |||||||    
T  13897973 gaaaaatgttagatagacaccatttattctcatacacttttctacaccccatacactagggagagagaagagaagatgaaagagaaagtgtgcttgtg 13898070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 36331249 - 36331388
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||||||| |||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  36331249 aaaatgttacatatacatcttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 36331348  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  36331349 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 36331388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 26141450 - 26141621
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagaga--gaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||| ||||| ||||||   ||||||  ||||||||| ||| || ||||||||||  ||||| ||||| |||||||||||| ||||||| |    
T  26141450 aaaatgttacatagacaccctttatttccatacactcttgtacaccccatacattaggaagagaaagaagaggagagaaaagagaaagtgtgcttgtgtg 26141549  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |  |||| ||||| |  ||||| |||||||| ||| ||| ||| | | ||||||||  |||| |||||||||    
T  26141550 gggtccatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatg 26141621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 8956942 - 8956847
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||| ||| | |||||||| ||||||| || ||||||   ||||||||||||||||||||  ||| ||||||| ||||| |||||||    
T  8956942 aaaatgttacatagacagcatttattctcatacacccttctacaccctgtgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtg 8956847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 42823291 - 42823152
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| |||||||||||||| | |||||||||||||||  | | ||||||||||||   ||| |||||     
T  42823291 aaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaataagaaagagaaagtatacttatgcggg 42823192  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  |||| | ||||||||||||| | ||| ||||||    
T  42823191 gtccatatgaccacatgtcaaatttttttgtgggtgtcaa 42823152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 157
Target Start/End: Original strand, 45058473 - 45058559
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagt 157  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| ||||||||||||    
T  45058473 aaaatgttacatagacaccttttaattgcatacaccattgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagt 45058559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 47532045 - 47531947
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||||||| ||||| |||||||  ||||||  |||||||   ||| || ||||||||||||| | ||||| |||||||||||| ||||||||||    
T  47532045 aaaatgttacataaacaccctttattcccatacacacttgtacattccatacattaggaagagagaataggagagaaaagagaaagtgtgcttgtgcgg 47531947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 21746137 - 21746202
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    ||||||| |||||||||||||  | | |||||||||||||||||| ||||||||||||| ||||||    
T  21746137 atacacccttgtacacctcatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 21746202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 25395256 - 25395337
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaa 155  Q
    ||||||||||| ||| ||||||| || ||||| ||||||||||| |||| ||||| |||||| ||||  ||| ||||||||||    
T  25395256 aatgttacatagacatcttttatcctcatacatctttgtacacc-catgtactagaaagagaaaagagaagatgaaagagaaa 25395337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 25407062 - 25407171
Alignment:
Q  66 aatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||| ||||||||| |||  |||| |||||||||||| |  ||| ||||||| || || |||  |||||||||| |||| ||||||||||||| | ||||    
T  25407062 aatggaaaatgttatatagtcaccctttattcttatatatatttatacaccttatacattagtgagagagaagaggagatgaaagagaaagtgtgtttgt 25407161  T
Q  166 gcggaatcca 175  Q
    | || |||||    
T  25407162 gtgggatcca 25407171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 48587081 - 48587137
Alignment:
Q  141 gagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaattttt 197  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||  ||||| ||||||    
T  48587081 gagagaaaagagaaagtgtacttgtgcgggatccacgtgactacgtgtcagattttt 48587137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 33436029 - 33436173
Alignment:
Q  80 catatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtg 179  Q
    |||| |||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||  ||||||||    
T  33436029 catagacaccttttattctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtg 33436128  T
Q  180 actatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||  ||| | |||||||| ||| ||||||| | | ||||||||    
T  33436129 actacgtgttagatttttgtgtgggtgtcaaagggtgtattgcca 33436173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 17473198 - 17473031
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||    
T  17473198 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 17473099  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||| ||||  ||||||||    
T  17473098 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatg 17473031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 20701000 - 20700826
Alignment:
Q  66 aatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||| ||||||||||||| ||||| |||||||  ||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||| |    
T  20701000 aatggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttat 20700901  T
Q  166 gcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    ||||  ||||||||||||  ||||| |||||||| | |  |||||| | | ||||||||  |||| |||||||||    
T  20700900 gcggggtccacgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatg 20700826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 19930742 - 19930893
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||||||||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  |    
T  19930742 aatgatacatagacaccttttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 19930841  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||| ||||||  ||||| |||||||| ||||||||||| | | ||||||||    
T  19930842 ccacatgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 19930893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 7465657 - 7465824
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||||||| ||  |    
T  7465657 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggt 7465756  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||| ||||  ||||||||    
T  7465757 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatg 7465824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 28863633 - 28863482
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| |||||||||||||||| ||||||||||||||| ||||  |||||||||||| ||||||||||  |    
T  28863633 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggt 28863534  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  28863533 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 28863482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 10249304 - 10249442
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| |||||||||| |||| ||||| |||||||||||| ||||||||||  |    
T  10249304 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 10249403  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  ||||| |||||||| ||| |||||||    
T  10249404 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaa 10249442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 13438521 - 13438373
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  13438521 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 13438422  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattg 221  Q
    |||||||||||  ||||| |||||||| ||| ||||||| ||| |||||    
T  13438421 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattg 13438373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 211
Target Start/End: Complemental strand, 4060863 - 4060725
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||| ||||||||   ||||||| ||||||||| |||||| ||||||||||||||||||||| ||| |||||||| |||| ||||| ||    
T  4060863 aatgatacataaacatcttttatttccatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaaaagaaagtgtgcttatgcgggat 4060764  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||| ||||  ||||| |||||||| |||||||||||    
T  4060763 ccacgtaactacgtgtcagatttttgtgtggatgtcaaa 4060725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 40701656 - 40701505
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||||||||||   ||||||| |||||||||  ||||| ||||||||||||||||||||| |||||||||||| | ||||||||  |    
T  40701656 aatgatacatagacaccttttatttccatacacccttgtacacccgatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 40701557  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||| ||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  40701556 ccacgtaactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgcca 40701505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 32505570 - 32505708
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||  |||||||| ||||||| ||||||||| |||||| || |||||||||||| ||||| ||| |||||||| ||||||||||  |    
T  32505570 aatgatacatagacactctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgcggggt 32505669  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
    |||||||||||  ||||| |||||||| ||| |||||||    
T  32505670 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaa 32505708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 28381577 - 28381712
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||  | ||||||||||||||||||||| |||||||||||| ||||||||||| |    
T  28381577 aatgatacatagacaccctttattcccatacatccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgcggagt 28381676  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
    ||| |||||||  ||||| |||||||| ||| ||||    
T  28381677 ccatgtgactacgtgtcagatttttgtgtgggtgtc 28381712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 73 - 211
Target Start/End: Original strand, 38882733 - 38882874
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa- 171  Q
    |||| |||||| | ||| |||||||  ||||||| ||||||||| |||||| |||||||||| ||||| |||| |||||||||||||||||||||||       
T  38882733 aatgatacatagagaccatttattcccatacacccttgtacaccccatgcattaggaagagataagataagagaaaagagaaagtgcgcttgtgcggggg 38882832  T
Q  172 --tccacgtgactatatgtcaaatttttgtatggatgtcaaa 211  Q
      ||||||||||||  ||||| |||||||| |||||||||||    
T  38882833 ggtccacgtgactacgtgtcagatttttgtgtggatgtcaaa 38882874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 44152107 - 44152012
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||| |||||||||||||  ||||||| ||||| | |||||||| ||||||||||||||| |||| ||||||||||||| |||||||    
T  44152107 aaaatgttacataaacaccttttattcgcatacacccttgtatatctcatgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtg 44152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 2533303 - 2533135
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||||||||| |||||||  ||||||| ||||||||| ||| || | ||||||||||||| ||||  ||||| |||||| ||||||||||     
T  2533303 aaaatgttatatatacaccctttattcccatacacccttgtacaccccatacattgggaagagagaagaggagataaaagaaaaagtgtgcttgtgcggg 2533204  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     || | ||| |||  ||||| |||||||| ||| ||||||| ||| |||||||| ||||| |||||||||    
T  2533203 gtctatgtggctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatg 2533135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 9058640 - 9058507
Alignment:
Q  91 tttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtca 190  Q
    |||||||  ||||||  ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||| ||||||  |||||    
T  9058640 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtca 9058541  T
Q  191 aatttttgtatggatgtcaaatgatatattgcca 224  Q
     |||||||| ||| ||||||| | | ||||||||    
T  9058540 gatttttgtgtgggtgtcaaagggtgtattgcca 9058507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 36169016 - 36168847
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||  ||||||||| ||| || ||||||||||||| | ||||| |||||||||||  ||||||||||     
T  36169016 aaaatgttacataaacaccctttattctcatacactcttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtatgcttgtgcggg 36168917  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||| ||| | |  |||||||||||||| |||  || ||| ||| ||||| ||| |||| |||||||||    
T  36168916 gtccatgtggccacgtgtcaaatttttgtgtgggagttaaaggatgtattgtcatctaaggatgtctatg 36168847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 38273063 - 38273231
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||| ||||||| ||||| |||||||| ||||| ||| ||||||| ||| || ||||||||||||| | ||||| |||||||||||| ||| ||||||     
T  38273063 aaaatattacataaacaccatttattctcatacatctt-gtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgctagtgcggg 38273161  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||| ||| |||  ||||| |||||||| ||| ||| ||| | | ||||||||| ||||||||||||||    
T  38273162 gtccatgtggctacgtgtcagatttttgtgtgggtgttaaagggtgtattgccatctaagaatgtctatg 38273231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 30915614 - 30915517
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaattttt 197  Q
    ||||||| ||||||||| |||| | ||||||||||||||||||||| |||||||||||| |||||| |||  ||||||||||||  ||||| ||||||    
T  30915614 atacacccttgtacaccccatgtattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagattttt 30915517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 40613822 - 40613991
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||| ||||||||| ||| || || ||||| |||| | ||||| |||||||||||| ||||||||||     
T  40613822 aaaatgttacatagacaccctttattcccatacacccttgtacaccccatacattatgaagaaagaataggagagaaaagagaaagtgtgcttgtgcggg 40613921  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     |||| ||| | |  ||||| |||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  40613922 gtccatgtggccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 40613991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 42257373 - 42257220
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||| ||||||| ||||| ||||||  |||||||  ||||||||| ||| || |||||||| |||||| ||||| |||||||||||| ||||||||||     
T  42257373 aaaatattacatagacaccctttatttctatacactcttgtacaccccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgcggg 42257274  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     |||| ||| | |  ||||| |||||| | ||| ||||||||||| ||||||||    
T  42257273 gtccatgtggccacgtgtcagatttttatgtgggtgtcaaatgatgtattgcca 42257220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 208
Target Start/End: Complemental strand, 3738128 - 3737986
Alignment:
Q  66 aatgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||| ||||||||||||| ||||| | |||| | |||||||||||||||||  ||   ||||||||| |||||| ||||||||| ||||| || ||||||    
T  3738128 aatggaaaatgttacatagacaccctatattttcatacacctttgtacaccctatattctaggaagaaagaagaggagaggaaaaagaaaatgtgcttgt 3738029  T
Q  166 gcggaatccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
    ||||  ||||| |||| | |||||| |||||||| ||| ||||    
T  3738028 gcggggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 3034903 - 3035031
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||||| |||||||||||| | |||||||||||||||  ||| ||||||||||||   |||||||||     
T  3034903 aaaatgttacatagacaccttttaattgcatacaccttggtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcggg 3035002  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
     ||||  |||| | |||||| ||||||||    
T  3035003 gtccatatgaccacatgtcagatttttgt 3035031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 8085694 - 8085628
Alignment:
Q  5 ccaagaatataggcgaggtctactacatagta---tcacttagactttaggtctttaaatccacaat 68  Q
    |||| |||||||| ||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  8085694 ccaataatataggtgaggtctactacatagtactatcacttagactttaggtctttaaatccacaat 8085628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 178
Target Start/End: Complemental strand, 3440159 - 3440052
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||   |||||||||||||||||  ||   |||| ||||||||||| ||||||||||||||| || ||||||||||     
T  3440159 aaaatgttacatagacaccctttatttccatacacctttgtacaccctatattctagaaagagagaagaggagaggaaagagaaaatgtgcttgtgcggg 3440060  T
Q  171 atccacgt 178  Q
     |||||||    
T  3440059 gtccacgt 3440052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 17819960 - 17820063
Alignment:
Q  107 tttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatg 206  Q
    ||||||||||||||||| ||||||||||||||| |||| |||||||||| || | ||||| ||  ||||||| || | |||||| |||||||| ||| ||    
T  17819960 tttgtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtg 17820059  T
Q  207 tcaa 210  Q
    ||||    
T  17820060 tcaa 17820063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 38732534 - 38732395
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||| | ||||||| |||||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  38732534 aaaatgttacatagacaccttttaattgcatacatccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 38732435  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  |||| | |||||| |||||||| ||| ||||||    
T  38732434 gtccatatgaccacatgtcagatttttgtgtgggtgtcaa 38732395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 210
Target Start/End: Original strand, 2997408 - 2997546
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaa 171  Q
    |||||||||||| |||| ||||| |   ||||||| |||||||||||||| | |||||||||||||||  ||| |||||||||||||  |||||||||      
T  2997408 aaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 2997507  T
Q  172 tccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    ||||  || | | |||||| |||||||| ||| ||||||    
T  2997508 tccatatggccacatgtcagatttttgtgtgggtgtcaa 2997546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 41575278 - 41575148
Alignment:
Q  111 tacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg-cggaatccacgtgactatatgtcaaatttttgtatggatgtca 209  Q
    |||| |||||||| ||||| ||||||||| |||| ||||||||||||| |||||||  ||  ||||| |||| | ||||||||||||||| || ||||||    
T  41575278 tacatctcatgcattaggacgagagaagaggagatgaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtgaatgtca 41575179  T
Q  210 aatgatatattgccatttaagaatgtctatg 240  Q
    || | | |||| |||| |||| |||||||||    
T  41575178 aagggtgtattaccatctaaggatgtctatg 41575148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 240
Target Start/End: Complemental strand, 33436351 - 33436222
Alignment:
Q  111 tacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    ||||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||  | ||||| ||   |  ||||| |||||| | ||| ||||||    
T  33436351 tacacctcatgaactaggaagagagaagaggataggaaagagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgtcaa 33436252  T
Q  211 atgatatattgccatttaagaatgtctatg 240  Q
    | | | ||||||||| |||| |||||||||    
T  33436251 aaggtgtattgccatctaaggatgtctatg 33436222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 13365533 - 13365374
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   || |||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  13365533 aaaatgttacatagacaccttttaattgcattcacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 13365434  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaag 230  Q
     ||||  ||   | |||||| |||||||| ||| ||||||  | ||||||||||| ||||    
T  13365433 gtccatatggtcacatgtcagatttttgtgtgggtgtcaaggggtatattgccatctaag 13365374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 240
Target Start/End: Original strand, 5574479 - 5574577
Alignment:
Q  142 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||| | ||| ||||||| | | ||||||||  ||||| ||||||||    
T  5574479 agagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatg 5574577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 17823968 - 17823874
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    ||||||||||||| ||| | ||||||   ||||||| ||||||||| |||  | | |||||||||||||||||| ||||||||||||| ||||||    
T  17823968 aaaatgttacatagacatcctttatttacatacacccttgtacaccccatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 17823874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 41758769 - 41758683
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaa 155  Q
    ||||||||||||||| |||| ||||||||| ||||| | ||||||||| |||  | ||||||||||||||| ||||  |||||||||    
T  41758769 gaaaaatgttacatagacacattttattctcatacatccttgtacaccccatatattaggaagagagaagaggagataaaagagaaa 41758683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 208
Target Start/End: Original strand, 26891424 - 26891561
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||||||||| || ||| | |||||| ||| ||||||   |  | |||||||||||||||  |||||||||||||| || |||||| ||      
T  26891424 aaaatgttacatatacacccttaattttcatacacatttttacaccctgtatattaggaagagagaagagaagaggaaagagaaaatgtgcttgttcgag 26891523  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
     |||||||||| | |||||| |||||||| ||| ||||    
T  26891524 gtccacgtgaccacatgtcagatttttgtgtgggtgtc 26891561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 43490301 - 43490162
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| |||||||||  ||| | |||||||||||||||  ||| |||||| ||||||  |||||||||     
T  43490301 aaaatgttacatagacaccttttaattgcatacacccttgtacaccctatgtattaggaagagagaagagaagaagaaagataaagtgtacttgtgcggg 43490202  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  43490201 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 43490162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 158
Target Start/End: Original strand, 21301418 - 21301507
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||| ||| ||||| ||||||   ||||||   |||||||||||||||||||||||| ||||||  |||  ||||||||||||    
T  21301418 gaaaaatgttagatacacaccctttatttccatacactcatgtacacctcatgcactaggaagaaagaagagaagataaaagagaaagtg 21301507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 45097655 - 45097808
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||| |||||| |   ||||||  ||||||| |  ||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  45097655 aaaatgttacataaacatcttttaattgcatacactcttgtacatccgatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 45097754  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     ||||  || | | |||||| |||||||||||| ||||||  ||| ||||||||    
T  45097755 gtccatatggccacatgtcagatttttgtatgggtgtcaagggatgtattgcca 45097808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 27864809 - 27864731
Alignment:
Q  146 gaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||||||| |||| |||||  ||||||||| ||  ||||| |||||||| ||||||||||| | | ||||||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgcca 27864731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 11427796 - 11427645
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| ||    
T  11427796 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 11427697  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| ||| ||||||||    
T  11427696 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgcca 11427645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 17598732 - 17598581
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||||||||||   ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  17598732 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 17598633  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    ||||||||| |  ||||| |||||||| ||| ||||||| ||| ||||||||    
T  17598632 ccacgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgcca 17598581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 31976428 - 31976259
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||| ||| || ||||||||||||||| ||||| |||||||||||| ||||||||||     
T  31976428 aaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 31976329  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     | || ||||| |  ||||| |||||||| ||| ||| ||| | ||||||||||  |||| |||||||||    
T  31976328 gttcatgtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatg 31976259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 22880580 - 22880731
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||||||||| |||||||  ||||||| ||||||||| |||| | ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  22880580 aatgatacatatacaccatttattcccatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 22880679  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| | |||||| ||| ||||||| | | ||||||||    
T  22880680 ccacgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgcca 22880731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 32869856 - 32869705
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  32869856 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 32869757  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||||||||||  ||||| |||||||| ||| ||||||| | | ||||||||    
T  32869756 ccacgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgcca 32869705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 29858005 - 29857853
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| |||||||||||||||  |||| |||||||||||| |||| ||||| ||    
T  29858005 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggat 29857906  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccat 225  Q
    |||||| ||||  ||||| |||||||| ||| ||| ||| | | |||||||||    
T  29857905 ccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccat 29857853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 23128063 - 23128196
Alignment:
Q  87 accttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatat 186  Q
    ||||||||||   ||||||| ||||||| | |||||| |||||||||| |||| ||||| |||||||||||| ||||||| || |||||||||||||  |    
T  23128063 accttttatttccatacacccttgtacatcccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgt 23128162  T
Q  187 gtcaaatttttgtatggatgtcaaatgatatatt 220  Q
    |||| |||||||| ||| ||||||| ||| ||||    
T  23128163 gtcagatttttgtgtgggtgtcaaaggatgtatt 23128196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 221
Target Start/End: Complemental strand, 15832743 - 15832607
Alignment:
Q  85 acaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactat 184  Q
    ||||| |||||||  ||||||| ||||||||| |||||| |||||||| |||||| ||||  ||||||||| ||   |||||| | |||||||||||||     
T  15832743 acaccctttattccaatacacccttgtacaccccatgcattaggaagatagaagaggagaaaaaagagaaaatgtatttgtgcaggatccacgtgactac 15832644  T
Q  185 atgtcaaatttttgtatggatgtcaaatgatatattg 221  Q
     |||||||||||||| ||| ||||||||||| |||||    
T  15832643 gtgtcaaatttttgtgtgggtgtcaaatgatttattg 15832607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 68 - 203
Target Start/End: Complemental strand, 30870196 - 30870062
Alignment:
Q  68 tgaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 167  Q
    |||||||||||| ||| ||||| |||||| | |||||||||||||||||  ||  ||||| ||||||||||| ||||||||||||||| || ||||||||    
T  30870196 tgaaaaatgtta-atagacaccctttattttcatacacctttgtacaccctatatactagaaagagagaagaggagaggaaagagaaaatgtgcttgtgc 30870098  T
Q  168 ggaatccacgtgactatatgtcaaatttttgtatgg 203  Q
    ||  |||| ||||| | |||| | |||||| |||||    
T  30870097 ggggtccatgtgaccacatgttagatttttatatgg 30870062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 158
Target Start/End: Original strand, 31952950 - 31953037
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||||||||| ||||| |||||||| ||||| | || |||||| ||||||||||||||||||||||  ||| |||||||||||||    
T  31952950 aaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtg 31953037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 167
Target Start/End: Original strand, 31110681 - 31110777
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgc 167  Q
    ||||||||||||| ||| | ||||||   ||||||||||||||||| ||| || |||||||||||||||  |||| |||||||||||| ||||||||    
T  31110681 aaaatgttacatagacatcctttatttccatacacctttgtacaccccatacattaggaagagagaagagtagagaaaagagaaagtgtgcttgtgc 31110777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 212
Target Start/End: Original strand, 6209415 - 6209526
Alignment:
Q  101 tacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgta 200  Q
    |||| ||||||||| | |||||| ||||||||||||||| ||||| |||||||||||| ||| ||||||  ||||||||||||  || || ||||||||     
T  6209415 tacatctttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtg 6209514  T
Q  201 tggatgtcaaat 212  Q
    ||  ||||||||    
T  6209515 tgagtgtcaaat 6209526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 4231728 - 4231630
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||    
T  4231728 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 4231630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 224
Target Start/End: Original strand, 31109351 - 31109473
Alignment:
Q  102 acacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtat 201  Q
    ||||| ||||| ||| |||||| |||||||||| |||| ||||| ||||||||||||  ||| |||||  || |||||||||  ||||| |||||||| |    
T  31109351 acacccttgtataccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgt 31109450  T
Q  202 ggatgtcaaatgatatattgcca 224  Q
    |||||||||| | | ||||||||    
T  31109451 ggatgtcaaagggtgtattgcca 31109473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 15989962 - 15990101
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  15989962 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 15990061  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  15990062 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 15990101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 30341280 - 30341419
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  30341280 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 30341379  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  30341380 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 30341419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 198
Target Start/End: Complemental strand, 946519 - 946429
Alignment:
Q  108 ttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttg 198  Q
    ||||||| |||||||| ||||||||||||||| ||||| |||||||||||| ||| | |||| ||  |||||||||  ||||| |||||||    
T  946519 ttgtacatctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagagcgggatttacgtgactaggtgtcagatttttg 946429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 28536406 - 28536503
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||||||  ||| | |||||| | ||||||| ||||||||| |||||| ||||||||| |||||  |||  |||||||||||| |||||||    
T  28536406 gaaaaatgttacatcgacatcatttattttcatacacccttgtacaccccatgcagtaggaagagggaagagaagataaaagagaaagtgtgcttgtg 28536503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 15507944 - 15508083
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||| | ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  15507944 aaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 15508043  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || | | |||||| |||||||| ||| ||||||    
T  15508044 gtccatatggccacatgtcagatttttgtgtgggtgtcaa 15508083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 12732626 - 12732493
Alignment:
Q  107 tttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatg 206  Q
    ||||| ||||| ||| ||||| ||||||||||| |||| |||||||||| || |||| || || |||||| |  | |  ||||| |||||||| ||| ||    
T  12732626 tttgtgcaccttatgtactagaaagagagaagaggagatgaaagagaaaatgtgcttatgtgggatccacatagccacgtgtcagatttttgtgtgggtg 12732527  T
Q  207 tcaaatga-tatattgccatttaagaatgtctatg 240  Q
    || ||||| |||||||||| |||||||||||||||    
T  12732526 tc-aatgattatattgccacttaagaatgtctatg 12732493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 9379669 - 9379801
Alignment:
Q  108 ttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgt 207  Q
    ||||| |||| ||||| |||||||||| ||||  ||| |||||||||| || | ||||| |  |||||| || | |  |||||||||||||||||| |||    
T  9379669 ttgtataccttatgcattaggaagagaaaagagaagatgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgt 9379768  T
Q  208 caaatgatatattgccatttaagaatgtctatg 240  Q
    |||  ||| ||||| ||| |||| |||||||||    
T  9379769 caagggatgtattgtcatctaaggatgtctatg 9379801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 22421999 - 22422043
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacac 115  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||    
T  22421999 aaaatgttacatagacaccatttattctcatacacccttgtacac 22422043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 849 - 1002
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||     
T  849 aaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 948  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    || ||||||||||  |||||  ||||||| ||||||| ||| | | ||||||||    
T  949 attcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgcca 1002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 849 - 1002
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||     
T  849 aaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcggg 948  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    || ||||||||||  |||||  ||||||| ||||||| ||| | | ||||||||    
T  949 attcacgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgcca 1002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 71 - 199
Target Start/End: Complemental strand, 41423862 - 41423734
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||| |  |||||| |||     
T  41423862 aaaatgttacataaacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaatatgcttgtacggg 41423763  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
    ||| ||||||| | |||||| ||||||||    
T  41423762 atctacgtgaccacatgtcagatttttgt 41423734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 4999436 - 4999603
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||||||||||||| ||||||| ||||||||| |||||| ||||||||||||||| ||||  |||||||||||| | ||||||||  |    
T  4999436 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgcggggt 4999535  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  | ||| |||||||| ||| ||||||| | | ||||||||| ||||  ||||||||    
T  4999536 ccacgtgactacgtatcagatttttgtgtgggtgtcaaaaggtgtattgccatctaagggtgtctatg 4999603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 19330020 - 19329853
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  19330020 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 19329921  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||| ||  ||||| |||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  19329920 ccacgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatg 19329853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 32951415 - 32951582
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||||  ||||||| ||||||| ||||||||| |||| | ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  32951415 aatgatacatagacaccccttattctcatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 32951514  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||| | |||||||| ||||||| ||| ||| ||||| ||| ||||| ||||||||    
T  32951515 ccacgtgactacgtgttagatttttgtgtggatgttaaaggatgtattgtcatctaagagtgtctatg 32951582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 11044356 - 11044246
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||  |||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||  |    
T  11044356 aatgatacatagacactctttattttcatacacctttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtacttgtgcggggt 11044257  T
Q  173 ccacgtgacta 183  Q
    |||||||||||    
T  11044256 ccacgtgacta 11044246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 35523056 - 35522887
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||  ||||||| ||||||||| ||| || ||||||||||||||| ||||| |||||||||||| ||||||||||     
T  35523056 aaaatgttacataaacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggg 35522957  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||  || | |  ||||| |||||||| ||| ||| ||||| | |||||||| ||||| |||||||||    
T  35522956 atccatatggccacgtgtcagatttttgtgtgggtgttaaatggtgtattgccacttaaggatgtctatg 35522887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 3784138 - 3784022
Alignment:
Q  108 ttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgt 207  Q
    ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| |||||||||| |||||||||||||  ||||| |||||||| ||| |||    
T  3784138 ttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtgt 3784039  T
Q  208 caaatgatatattgcca 224  Q
    |||| ||| ||||||||    
T  3784038 caaaagatgtattgcca 3784022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 40957885 - 40957718
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| |||||  ||||| | ||||||| ||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||| ||| ||    
T  40957885 aatgatacatagacacccattattttcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacgggat 40957786  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  ||||| |||||||| ||| | |||||   | ||||||||  ||||| ||||||||    
T  40957785 ccacgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatg 40957718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 240
Target Start/End: Original strand, 19436114 - 19436276
Alignment:
Q  78 tacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacg 177  Q
    |||||| ||||| |||||||| ||||||| ||||||||| |||||| |||||||||| ||||  |||| |||||||||||| |||| ||||| |||||||    
T  19436114 tacatagacaccatttattctcatacacccttgtacaccccatgcattaggaagagaaaagagaagagaaaagagaaagtgtgcttatgcgggatccacg 19436213  T
Q  178 tgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    ||||||  ||||| |||||||| ||| ||||||| | | ||||| ||  |||| |||||||||    
T  19436214 tgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatg 19436276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 35468775 - 35468944
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    |||||||||||||||||||||||||||| ||||| | || |||| |||||| ||||||||||||||||| || ||||||||||||||| | |||||| |     
T  35468775 aaaatgttacatatacaccttttattctcatacatccttatacatctcatgaactaggaagagagaagaggataggaaagagaaagtgtgtttgtgcagg 35468874  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     ||||| ||   | || | | |||||| | ||| ||||||||||| ||||||||| |||| |||||||||    
T  35468875 gtccacatggtcacatattagatttttatgtgggtgtcaaatgatgtattgccatctaaggatgtctatg 35468944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 8080305 - 8080429
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  8080305 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 8080404  T
Q  173 ccacgtgactatatgtcaaattttt 197  Q
    |||||||||||  ||||| ||||||    
T  8080405 ccacgtgactacgtgtcagattttt 8080429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 16374744 - 16374883
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||  ||| || ||||||||||||| | |||| ||||||||| ||| ||||||| |      
T  16374744 aaaatgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaaaaagagatgaaagagaatgtgtgcttgtgtgag 16374843  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    ||||||||||| |  ||||| |||||||| ||||||||||    
T  16374844 atccacgtgaccacgtgtcagatttttgtgtggatgtcaa 16374883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 38267191 - 38267080
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||||| ||||| | |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| ||||||||    
T  38267191 atacaccttcgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgt 38267092  T
Q  200 atggatgtcaaa 211  Q
     ||| |||||||    
T  38267091 gtgggtgtcaaa 38267080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 73 - 199
Target Start/End: Complemental strand, 38837395 - 38837269
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| ||||||   ||||||| ||||||| | |||||| ||||||||||||||| ||||| |||||||||||| ||||||||||  |    
T  38837395 aatgatacatagacaccctttatttccatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 38837296  T
Q  173 ccacgtgactatatgtcaaatttttgt 199  Q
    |||||||||||  ||||| ||||||||    
T  38837295 ccacgtgactacgtgtcagatttttgt 38837269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 21234581 - 21234412
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||||||| ||||||| ||||||||| ||| || ||||||||||| | | |||||| |||||||| || ||||||||||     
T  21234581 aaaatgttacatagacaccttttattctcatacaccattgtacaccccatacattaggaagagaggaaaggagaggtaagagaaaatgtgcttgtgcggg 21234482  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     | || ||| |||  |||||||||||||| ||  ||||||| | | ||||| ||  |||| |||||||||    
T  21234481 gtacatgtggctacgtgtcaaatttttgtgtgagtgtcaaagggtgtattgtcacctaaggatgtctatg 21234412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 31736057 - 31735953
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||| | |||||||||||  ||||||| ||||||||| ||| || ||||||||||||||| ||||| |||||||||||| ||||||||||     
T  31736057 aaaatgttagatagataccttttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggg 31735958  T
Q  171 atcca 175  Q
    |||||    
T  31735957 atcca 31735953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 71 - 205
Target Start/End: Complemental strand, 12311084 - 12310950
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| ||||||   ||||||||||||||| ||  |  ||||||||||||||||| || |||||||| ||| || |||||| | |     
T  12311084 aaaatgttacatagacaccctttatttccatacacctttgtacatcttgtatactaggaagagagaagaggaaaggaaagataaaatgtgcttgttcagg 12310985  T
Q  171 atccacgtgactatatgtcaaatttttgtatggat 205  Q
    ||||||||||| | |||||| ||||||||||||||    
T  12310984 atccacgtgaccacatgtcagatttttgtatggat 12310950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 8238393 - 8238240
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| || ||||||| |   ||||||| ||||||||| |||| | |||||||||||||||  ||| |||||||||||||  |||||||||     
T  8238393 aaaatgttacatagacgccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 8238294  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
     ||||  |||||| |||||| |||||||| ||| ||||||| | | ||||||||    
T  8238293 gtccatatgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgcca 8238240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 35137689 - 35137560
Alignment:
Q  95 ttcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatt 194  Q
    |||| ||||||| ||||||| | |||||| ||||||||||||||| ||||| |||||||||||| | ||||||||  ||||||||||||  ||| | |||    
T  35137689 ttctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatt 35137590  T
Q  195 tttgtatggatgtcaaatgatatattgcca 224  Q
    ||||| ||| ||||||| | | ||||||||    
T  35137589 tttgtgtgggtgtcaaagggtgtattgcca 35137560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 71 - 240
Target Start/End: Original strand, 46033721 - 46033890
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| ||||| |||||||| ||||||| ||||||||| ||| || |||||| |||||||| ||||| ||||||||| |  |||||||||||    
T  46033721 aaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaatagagaagaggagagaaaagagaaaatatgcttgtgcgga 46033820  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
     | || ||||| |  ||||| |||||| | ||| ||| ||| | | ||||||||  ||||||| ||||||    
T  46033821 gttcatgtgaccacgtgtcagatttttatgtgggtgttaaagggtgtattgccacctaagaatatctatg 46033890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 3694510 - 3694419
Alignment:
Q  108 ttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||||| |||||| | ||||||||||||| ||||| |||||||||||| |||||||||| |||||| ||||||  ||||| ||||||||    
T  3694510 ttgtacaccccatgcattgggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgt 3694419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 38044377 - 38044238
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||||| |||| | |||||||||| ||||  ||| |||||||||||||  |||||||||     
T  38044377 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagaaaagagaagaagaaagagaaagtgtacttgtgcggg 38044278  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  || ||| |||||| |||||||| ||||||||||    
T  38044277 gtccatatggctacatgtcagatttttgtgtggatgtcaa 38044238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 22343541 - 22343443
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    ||||||||||||| |||||||||| |   ||||||| |||||||||||||| | |||||||||||||||  ||| |||||||||||||  |||||||||    
T  22343541 aaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 22343443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 117 - 210
Target Start/End: Complemental strand, 36208307 - 36208214
Alignment:
Q  117 tcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    ||||||||||||||||||||||| ||||||||||||||| || |||||||| |  |||||||||| | ||||||  ||||||| ||| ||||||    
T  36208307 tcatgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtcaa 36208214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 199
Target Start/End: Original strand, 27744229 - 27744357
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||| ||| ||||| |||||||  ||| | | ||||||| | |||||||||||||||||||||| ||||||| ||||||| || |||| || ||     
T  27744229 aaaatgttatataaacaccatttattcccatatatccttgtacatcccatgcactaggaagagagaagaggagaggatagagaaaatgtgcttatgaggg 27744328  T
Q  171 atccacgtgactatatgtcaaatttttgt 199  Q
    ||||||||| | | |||||| ||||||||    
T  27744329 atccacgtggccacatgtcagatttttgt 27744357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Complemental strand, 7389531 - 7389429
Alignment:
Q  109 tgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
    |||||||| |||| | ||||||||||||  | ||||| |||||||||||| ||||||||||  ||||||||||||  ||||| |||||||| ||| ||||    
T  7389531 tgtacaccccatgtattaggaagagagagtaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgtc 7389432  T
Q  209 aaa 211  Q
    |||    
T  7389431 aaa 7389429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 71 - 169
Target Start/End: Complemental strand, 26296824 - 26296726
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    |||||||||| || ||||| | ||||   ||||||| ||||||||||||| || || |||||||||||| ||||| ||||||||| |||||||||||||    
T  26296824 aaaatgttacgtagacaccatatatttccatacacccttgtacacctcatacattaagaagagagaagaggagagaaaagagaaaatgcgcttgtgcgg 26296726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 166
Target Start/End: Complemental strand, 18207361 - 18207264
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtg 166  Q
    ||||||||||| ||| | ||| |||||| | ||||||| ||||||||   || |||||||||||||||||| |||| ||||||||||||| |||||||    
T  18207361 gaaaaatgttagatagataccctttattatcatacacccttgtacactctatccactaggaagagagaagaggagatgaaagagaaagtgtgcttgtg 18207264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 3434730 - 3434573
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||| | ||||||||| |||||| |||||||||||||          ||||||||||| |||||||||| ||    
T  3434730 aatgatacatagacaccctttattcccatacagccttgtacaccccatgcattaggaagagagaa----------aagagaaagtgtgcttgtgcgggat 3434641  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccatttaagaatgtctatg 240  Q
    |||||||||||  |||||  ||||||| ||| ||||||| | | ||||||||  |||| |||||||||    
T  3434640 ccacgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatg 3434573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 39255842 - 39255996
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||||| ||||| |||||| | ||||||| |||||||    || |||  ||||||||||||| |||| |||||||||||||  |||||| |    
T  39255842 gaaaaatgttacatagacaccctttattatcatacacccttgtacattctatccaccgggaagagagaagaggagatgaaagagaaagtgttcttgtgtg 39255941  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    || |||||||| | |  ||||| |||||||||||| | |||| || | ||||||||    
T  39255942 gagtccacgtg-ccacgtgtcagatttttgtatgggtatcaagtggtgtattgcca 39255996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 70 - 169
Target Start/End: Complemental strand, 41915922 - 41915823
Alignment:
Q  70 aaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgg 169  Q
    |||||||||||||| |||||||||| |   ||||||| ||||||||| |||  | |||||||||||||||  ||| |||||||||||||  |||||||||    
T  41915922 aaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgg 41915823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 1766702 - 1766795
Alignment:
Q  72 aaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    |||||||||||| ||||  ||| |||| ||| ||  ||||| |||||||  |||| |||||||||||| |||||||||||||||||| ||||||    
T  1766702 aaatgttacatagacacactttgttctcatatactcttgtatacctcatatactacgaagagagaagaggagaggaaagagaaagtgtgcttgt 1766795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 158
Target Start/End: Original strand, 32564375 - 32564433
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    ||||||| |||||||||||||| | |||||||||||||||  ||| |||||||||||||    
T  32564375 atacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtg 32564433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 224
Target Start/End: Original strand, 36361904 - 36361986
Alignment:
Q  142 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgcca 224  Q
    |||| |||||||||||| ||||||| ||  ||||||||||||  ||||| |||||||| ||| ||||||| ||| ||||||||    
T  36361904 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgcca 36361986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 2318161 - 2318302
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactag-ga-agagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||| ||||  ||||||   ||||||||||||||||  |||||| ||| || ||||||||||||||| ||||||||||||  |||| ||      
T  2318161 aaaatgttacatagacacactttatttccatacacctttgtacactccatgcattagagagagagagaagatgagatgaaagagaaagtatgcttatgtc 2318260  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    |  |||||||||| | | |||| |||||||| ||| ||||||    
T  2318261 gggtccacgtgaccacacgtcagatttttgtgtgggtgtcaa 2318302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 210
Target Start/End: Complemental strand, 7728088 - 7727947
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcg 168  Q
    ||||||||||||||| |||||||||| |   ||||| | ||||||||| |||  | |||||||||||||||  ||| |||| ||||||||  ||||||||    
T  7728088 gaaaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaacagaaagtgtacttgtgcg 7727989  T
Q  169 gaatccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    |  ||||  |||| | |||||| |||||| | || |||||||    
T  7727988 gggtccatatgaccacatgtcagatttttatgtgaatgtcaa 7727947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 10343534 - 10343570
Alignment:
Q  122 cactaggaagagagaagatgagaggaaagagaaagtg 158  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10343534 cactaggaagagagaagaggagaggaaagagaaagtg 10343570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 45223224 - 45223128
Alignment:
Q  69 gaaaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgt 165  Q
    ||||||||| ||||| ||| | ||||||   ||||| ||||||||||| |||  | | | |||||||||||||||| |||||||||| |||||||||    
T  45223224 gaaaaatgtcacatagacatcctttatttacatacatctttgtacaccccatatatttgaaagagagaagatgagatgaaagagaaaatgcgcttgt 45223128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 210
Target Start/End: Original strand, 40846033 - 40846172
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| | |||||||| |   ||||||| ||||||| |||||    |||||||||||||||  ||| |||||||||||||   ||||||||     
T  40846033 aaaatgttacatagataccttttaattgcatacacccttgtacatctcatcttttaggaagagagaagagaagaagaaagagaaagtgtatttgtgcggg 40846132  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
     ||||  | |||| |||| | |||||||| ||||||||||    
T  40846133 gtccatataactacatgttagatttttgtgtggatgtcaa 40846172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 134
Target Start/End: Original strand, 46374744 - 46374807
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagaga 134  Q
    ||||||||||||| ||||| |||||||  ||||||| ||||||||| ||| || ||||||||||    
T  46374744 aaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagaga 46374807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 36362135 - 36362057
Alignment:
Q  142 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatatt 220  Q
    |||| |||||||||||| ||||||| ||  ||||||||||||  ||||| |||||||| ||| ||||||| ||| ||||    
T  36362135 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtatt 36362057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 73 - 225
Target Start/End: Complemental strand, 4207 - 4055
Alignment:
Q  73 aatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaat 172  Q
    |||| |||||| ||||| |||||||  ||||||| ||||||||| |||||| |||||||||||||||  |||| |||||||||||| |||| ||||| ||    
T  4207 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggat 4108  T
Q  173 ccacgtgactatatgtcaaatttttgtatggatgtcaaatgatatattgccat 225  Q
    |||||| ||||  ||||| |||||||| ||| ||| ||| | | |||||||||    
T  4107 ccacgtaactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccat 4055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 10058 - 10182
Alignment:
Q  100 atacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgt 199  Q
    ||||||| |||||||||  ||||| ||||||||||||||| ||||| |||||||||||| |||||| ||   ||||||||||||  ||||| |||||| |    
T  10058 atacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttat 10157  T
Q  200 atggatgtcaaatgatatattgcca 224  Q
     ||||||||||| ||| ||||||||    
T  10158 gtggatgtcaaaggatgtattgcca 10182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 17283 - 17199
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaa 155  Q
    ||||||||||||| ||||| ||||||   |||||||||||||||||| ||   |||||||||||||||| |||||||||||||||    
T  17283 aaaatgttacatagacaccctttatttccatacacctttgtacaccttatattctaggaagagagaagaggagaggaaagagaaa 17199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 208
Target Start/End: Complemental strand, 17163 - 17097
Alignment:
Q  142 agaggaaagagaaagtgcgcttgtgcggaatccacgtgactatatgtcaaatttttgtatggatgtc 208  Q
    |||||||||||||| || ||||||||||  |||| ||||| | |||||| |||||||| ||||||||    
T  17163 agaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 210
Target Start/End: Complemental strand, 152678 - 152539
Alignment:
Q  71 aaaatgttacatatacaccttttattcttatacacctttgtacacctcatgcactaggaagagagaagatgagaggaaagagaaagtgcgcttgtgcgga 170  Q
    ||||||||||||| |||||||||| |   ||||||| ||||||| | |||| | ||| |||||||||||  ||| |||||||||||||   ||||||||     
T  152678 aaaatgttacatagacaccttttaattgcatacacccttgtacatcccatgtattagaaagagagaagagaagaagaaagagaaagtgtatttgtgcggg 152579  T
Q  171 atccacgtgactatatgtcaaatttttgtatggatgtcaa 210  Q
    |||||  |||| | |||||| |||||||| ||| ||||||    
T  152578 atccatatgaccacatgtcagatttttgtgtgggtgtcaa 152539  T

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