View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21276_low_33 (Length: 250)
Name: NF21276_low_33
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_33 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 1357316 - 1357558
Alignment:
| Q |
8 |
ccaagaaaatcacatgtggctcaattagctgacgcaagggactaaaaacaatggtttttgaacttgcagaactgagtcttcacagaaaaatttacagaac |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357316 |
ccaacaaaatcacatgtggctcaattagctgacgcaagggactaaaaacaatggtttttgaacttgcagaactgagtcttcacagaaaaatttacagaac |
1357415 |
T |
|
| Q |
108 |
taaaaccaaaaaacactataatagcagagactaaaatcatatttatgtgatgttcagatttagtcatataacatggatgagccatgaggatcctgttgcc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1357416 |
taaaaccaaaaaacactataatagcagagactaaaatcatatttatgtgatgttcagatttagtcatataacatggatgagcaatgaggatcctgttgcc |
1357515 |
T |
|
| Q |
208 |
atgagatcgacgtgaggatcatcgattggtttgagcatgattc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1357516 |
atgagatcgacgtgaggatcatcgattggtttgagcatgattc |
1357558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 250
Target Start/End: Original strand, 1358082 - 1358141
Alignment:
| Q |
191 |
atgaggatcctgttgccatgagatcgacgtgaggatcatcgattggtttgagcatgattc |
250 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||||||||| || || || |||||||||| |
|
|
| T |
1358082 |
atgacgatactgttgcaatgagatcgacgtgaggatcatcaataggcttaagcatgattc |
1358141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 152
Target Start/End: Complemental strand, 31738391 - 31738345
Alignment:
| Q |
106 |
actaaaaccaaaaaacactataatagcagagactaaaatcatattta |
152 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||||||||||||| |
|
|
| T |
31738391 |
actaaaaccaaaaaacaatgtaattgcagagactaaaatcatattta |
31738345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 38305975 - 38306021
Alignment:
| Q |
106 |
actaaaaccaaaaaacactataatagcagagactaaaatcatattta |
152 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
38305975 |
actaaaaccaaaaaacactataattgcaaggactaaaatcatattta |
38306021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 22159386 - 22159342
Alignment:
| Q |
108 |
taaaaccaaaaaacactataatagcagagactaaaatcatattta |
152 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
22159386 |
taaaaccaaaaaacactataattgcatggactaaaatcatattta |
22159342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 22218094 - 22218050
Alignment:
| Q |
108 |
taaaaccaaaaaacactataatagcagagactaaaatcatattta |
152 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
22218094 |
taaaaccaaaaaacactataattgcatggactaaaatcatattta |
22218050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University