View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_34 (Length: 244)
Name: NF21276_low_34
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34228734 - 34228955
Alignment:
| Q |
1 |
acagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaaggtttccgatg |
100 |
Q |
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| T |
34228734 |
acagagagacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaaggtttccgatg |
34228833 |
T |
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| Q |
101 |
aagacacaaaaggcgaaaactcattggacgaattaccagatggacattgttcagaagacacttcggttgatgaaatcacccacaatttgggatgcttagc |
200 |
Q |
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| T |
34228834 |
aagacacaaaaggcgaaaactcattggacgaattaccagatggacattgttcagaagacacttcggttgatgaaatcacccacaatttgggatgcttagc |
34228933 |
T |
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| Q |
201 |
tccgcttgcggtaccagtcctg |
222 |
Q |
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| T |
34228934 |
tccgcttgcggtaccagtcctg |
34228955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 30144532 - 30144456
Alignment:
| Q |
16 |
aatgttgtgataactga-tagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaagg |
91 |
Q |
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| T |
30144532 |
aatgctgtgataactgaatagaatatgggccaggctgttatcttcaacaaaacaacctatctttatggaagtcaagg |
30144456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 9787139 - 9787057
Alignment:
| Q |
16 |
aatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagttttatggaggtcaaggtttccga |
98 |
Q |
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| T |
9787139 |
aatgttgtgataactgatagaatatgggccatgctgttatcttcaacaaaacaacctatctttatggaagtcaagggttccga |
9787057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 42977140 - 42977070
Alignment:
| Q |
8 |
gacagaacaatgttgtgataactgatagaatgtgggcaaggctgttatcttcaacaaatcaacctagtttt |
78 |
Q |
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| T |
42977140 |
gacagaacacagtagtgataaccgatcgaatgtgggctaggcttttatcttcaacaaatcagcccagtttt |
42977070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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