View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21276_low_4 (Length: 619)
Name: NF21276_low_4
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21276_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 604
Target Start/End: Complemental strand, 32297685 - 32297084
Alignment:
| Q |
1 |
gtggttattcttttaaaccattatggctttgactaacataaaaggaaaaacatatgatttgaattaagttccttggaggtagttcggttgatgagttacg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
32297685 |
gtggttattcttttaaaccattatcgctttgactaacataaaaggaaaaacatatgatttgaattaagttccttacaggtagtttggttgatgagttacg |
32297586 |
T |
|
| Q |
101 |
caatagaacaatgaaaaagacttttaaaaaagaggttcatcgttcaaattctaaaaaccagcgcaattactaacttattatgatttgattatnnnnnnnn |
200 |
Q |
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||| |||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |
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| T |
32297585 |
caacagaacaattaaaaagagttttaagaaagagtttcatcgttcaaattctaaaaaccagcataattactaacttactatgatttgtttataagaaaa- |
32297487 |
T |
|
| Q |
201 |
ttaactaaattcaaatgtcttatgatcggatttggatttcctgcactaagaaattttccaattacaaacaataaatgatctcggttggacgactcaattt |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
32297486 |
ttaactgaattcaaatgtcttatgatcggatttggatttcctgcactaagaaattttccaattacaaacaataaatgatctcggttggacgattca-ttt |
32297388 |
T |
|
| Q |
301 |
acacaacaataaaaccaatgcacaacaatctcaaccgttaatcagaaatcaaacgtcgagccgttacgacaaatttcccttatgaacaagttatacaaag |
400 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32297387 |
acacaacaataaaaccaatgtacaacaatctcaaccgttaatcagagatcaaacgtcgagccgttacgacaaatttcccttatgaacaagttatacaaag |
32297288 |
T |
|
| Q |
401 |
gtttgattagattattgtacatgttttacaactcaaagccggttgtcagtgggccctaagcaggtaatcaatgggaccaggtgccacaaaatggtctttg |
500 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32297287 |
gtttgattagattattgtatatgttttacaactcaaagccggttgtcagtgggccctaagcaggtaatcaatgggaccaggtaccacaaaatggtctttg |
32297188 |
T |
|
| Q |
501 |
tatctttgttggtgtaatgaatttatgtgatgtaagtgtatttagtagaataatattaatcgtaccttatatgaaaagtataatctacatatacctttct |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32297187 |
tatctttgttggtgtaatgaatttatgtgatgtaagtgtatttagtagaataataataatcgtaccttatatgaaaagtataatctacatatacctttct |
32297088 |
T |
|
| Q |
601 |
tgat |
604 |
Q |
| |
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|||| |
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| T |
32297087 |
tgat |
32297084 |
T |
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