View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_6 (Length: 546)

Name: NF21276_low_6
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_6
NF21276_low_6
[»] chr2 (11 HSPs)
chr2 (417-531)||(17846675-17846789)
chr2 (390-512)||(17819664-17819786)
chr2 (392-504)||(17886916-17887028)
chr2 (413-531)||(17907866-17907984)
chr2 (390-535)||(17860035-17860180)
chr2 (69-166)||(17885359-17885456)
chr2 (71-165)||(17861091-17861185)
chr2 (69-166)||(17845007-17845104)
chr2 (69-165)||(17820911-17821010)
chr2 (65-102)||(17895417-17895454)
chr2 (444-527)||(17919209-17919292)
[»] chr5 (1 HSPs)
chr5 (105-154)||(19136001-19136050)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 417 - 531
Target Start/End: Original strand, 17846675 - 17846789
Alignment:
Q  417 caggtactttttcttggctgctacactccaatgttctattccagattactaccttgacaaagctatcaaaactggcttgtttaattatatatttgtcaaa 516  Q
    ||||||||||| ||||||  || ||| |||||||| ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||  ||    
T  17846675 caggtacttttacttggcatctgcaccccaatgttttatgccagatcactaccttgacaaagctatcaaaactggcttgtttgattatatacttgttcaa 17846774  T
Q  517 ttatacaataatcct 531  Q
    || ||||||||||||    
T  17846775 ttctacaataatcct 17846789  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 390 - 512
Target Start/End: Complemental strand, 17819786 - 17819664
Alignment:
Q  390 actaacaagtcaacattatattccttacaggtactttttcttggctgctacactccaatgttctattccagattactaccttgacaaagctatcaaaact 489  Q
    |||||||| ||||| || |||  ||| ||| ||||||| |||| ||||  ||| ||||||| |||| |||||||||||||||||||||||||||||||||    
T  17819786 actaacaaatcaaccttttatctcttgcagttacttttacttgtctgcggcaccccaatgtcctatgccagattactaccttgacaaagctatcaaaact 17819687  T
Q  490 ggcttgtttaattatatatttgt 512  Q
    ||||||||| |||||||| ||||    
T  17819686 ggcttgtttgattatatacttgt 17819664  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 392 - 504
Target Start/End: Original strand, 17886916 - 17887028
Alignment:
Q  392 taacaagtcaacattatattccttacaggtactttttcttggctgctacactccaatgttctattccagattactaccttgacaaagctatcaaaactgg 491  Q
    |||||| ||||| || |||  ||| ||||||||||| ||||||| || ||| |||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17886916 taacaaatcaaccttttatctcttgcaggtacttttacttggcttctgcaccccaatgttttatgccagattactaccttgacaaagctatcaaaactgg 17887015  T
Q  492 cttgtttaattat 504  Q
    ||| ||| |||||    
T  17887016 cttatttgattat 17887028  T

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Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 531
Target Start/End: Original strand, 17907866 - 17907984
Alignment:
Q  413 cttacaggtactttttcttggctgctacactccaatgttctattccagattactaccttgacaaagctatcaaaactggcttgtttaattatatatttgt 512  Q
    |||| |||||||||| |||| || || ||| ||| |||  ||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  17907866 cttataggtacttttacttgtcttctgcaccccagtgtgttatgccagatcactaccttgacaaagctatcaaaactggcttgtttgattatatacttgt 17907965  T
Q  513 caaattatacaataatcct 531  Q
      |||| ||||||||||||    
T  17907966 tcaattctacaataatcct 17907984  T

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Target: chr2; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 390 - 535
Target Start/End: Complemental strand, 17860180 - 17860035
Alignment:
Q  390 actaacaagtcaacattatattccttacaggtactttttcttggctgctacactccaatgttctattccagattactaccttgacaaagctatcaaaact 489  Q
    |||||||||||||| || |||  ||| ||| ||||||| |||| ||||  ||| ||||||| |||  |||||| ||||||||||||||||||| ||||||    
T  17860180 actaacaagtcaaccttttatctcttgcagttacttttacttgtctgcggcaccccaatgtcctaggccagatcactaccttgacaaagctattaaaact 17860081  T
Q  490 ggcttgtttaattatatatttgtcaaattatacaataatccttcat 535  Q
    ||||||||| ||||| || ||||  |||| |||||||| |||||||    
T  17860080 ggcttgtttgattatgtacttgttcaattctacaataacccttcat 17860035  T

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Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 17885359 - 17885456
Alignment:
Q  69 ttggtccacttggagatgttaccttaaatggtattaatttcaacattgaaggaggtacaaatctttattgggatgatcttgttaggcatcttgacaat 166  Q
    ||||||||||||||  |||||||||| |||||||| ||||  |||||||||||||||  |||||||| |||||||| |||| |||| |||||||||||    
T  17885359 ttggtccacttggaagtgttaccttagatggtattgattttgacattgaaggaggtagcaatctttactgggatgaccttgctaggaatcttgacaat 17885456  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 17861185 - 17861091
Alignment:
Q  71 ggtccacttggagatgttaccttaaatggtattaatttcaacattgaaggaggtacaaatctttattgggatgatcttgttaggcatcttgacaa 165  Q
    ||||||||||||  |||||||||| |||| ||| ||||  ||||||||||||||||||||||||| |||||||| |||| |||| | ||||||||    
T  17861185 ggtccacttggaagtgttaccttagatggaattgattttgacattgaaggaggtacaaatctttactgggatgaccttgctagggaacttgacaa 17861091  T

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Target: chr2; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 69 - 166
Target Start/End: Original strand, 17845007 - 17845104
Alignment:
Q  69 ttggtccacttggagatgttaccttaaatggtattaatttcaacattgaaggaggtacaaatctttattgggatgatcttgttaggcatcttgacaat 166  Q
    ||||||||||||||  |||||||||| |||||||| ||||  |||||||||||||||   ||||||| |||||||| |||| |||| |||||||||||    
T  17845007 ttggtccacttggaagtgttaccttagatggtattgattttgacattgaaggaggtagcgatctttactgggatgaccttgctaggaatcttgacaat 17845104  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 17821010 - 17820911
Alignment:
Q  69 ttggtccacttggagatgttaccttaaatggtattaatttcaacattgaagga---ggtacaaatctttattgggatgatcttgttaggcatcttgacaa 165  Q
    ||||||||||||||  |||||||||| |||||||| ||||  |||||||||||   | |||||||||||| |||||||| |||| |||| | ||||||||    
T  17821010 ttggtccacttggaagtgttaccttagatggtattgattttgacattgaaggagctgctacaaatctttactgggatgaccttgctagggaacttgacaa 17820911  T

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Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 102
Target Start/End: Original strand, 17895417 - 17895454
Alignment:
Q  65 caagttggtccacttggagatgttaccttaaatggtat 102  Q
    ||||||||||||||||||||||||||||||||||||||    
T  17895417 caagttggtccacttggagatgttaccttaaatggtat 17895454  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 444 - 527
Target Start/End: Original strand, 17919209 - 17919292
Alignment:
Q  444 ccaatgttctattccagattactaccttgacaaagctatcaaaactggcttgtttaattatatatttgtcaaattatacaataa 527  Q
    |||||||  |||||||||| | ||||||||||||||||||||| ||||||  ||| |||||  | |||| ||||| ||||||||    
T  17919209 ccaatgtattattccagatcaataccttgacaaagctatcaaatctggctcttttgattatgcaattgttaaattctacaataa 17919292  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Complemental strand, 19136050 - 19136001
Alignment:
Q  105 atttcaacattgaaggaggtacaaatctttattgggatgatcttgttagg 154  Q
    ||||| |||| |||||||| ||||| ||||||||||||||||||| ||||    
T  19136050 atttcgacatcgaaggaggaacaaacctttattgggatgatcttgctagg 19136001  T

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