View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_8 (Length: 508)

Name: NF21276_low_8
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_8
NF21276_low_8
[»] chr2 (4 HSPs)
chr2 (294-496)||(33136769-33136971)
chr2 (17-189)||(33135339-33135511)
chr2 (185-264)||(33136693-33136772)
chr2 (279-354)||(18558273-18558348)
[»] chr1 (14 HSPs)
chr1 (266-372)||(35265517-35265623)
chr1 (297-398)||(35228584-35228687)
chr1 (116-355)||(35193052-35193291)
chr1 (297-367)||(35295026-35295096)
chr1 (104-229)||(35203529-35203654)
chr1 (263-372)||(35273046-35273155)
chr1 (278-400)||(35477083-35477207)
chr1 (302-367)||(45534578-45534643)
chr1 (292-372)||(35203398-35203478)
chr1 (104-346)||(35254098-35254340)
chr1 (264-367)||(35222953-35223056)
chr1 (279-368)||(35146144-35146233)
chr1 (151-236)||(45534700-45534785)
chr1 (263-367)||(45526975-45527079)
[»] chr3 (4 HSPs)
chr3 (263-371)||(898643-898751)
chr3 (112-243)||(17663382-17663513)
chr3 (263-368)||(17663518-17663623)
chr3 (263-368)||(19246173-19246278)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 294 - 496
Target Start/End: Original strand, 33136769 - 33136971
Alignment:
Q  294 cgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattatctaccaatttcttgaa 393  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136769 cgcttctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattatctaccaatttcttgaa 33136868  T
Q  394 tattaggcttattattaatgactatgctgttcaggaagttgttctagggcttgttatttagcattgtttcctgtgatcctccggcctgcagtcttgtatt 493  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136869 tattaggcttattattaatgactatgctgttcaggaagttattatagggcttgttatttagcattgtttcctgtgatcctccggcctgcagtcttgtatt 33136968  T
Q  494 ttc 496  Q
    |||    
T  33136969 ttc 33136971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 33135339 - 33135511
Alignment:
Q  17 acctttatttcgcagcttatcgtgatttttgctatttcgaggcaaccagcttaagcaaaagaatgacgagcaaacgatcaagagccattgaggacttgcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33135339 acctttatttcgcagcttatcgtgatttttgctatttcgaggcaaccagcttaagcaaaagaatgacgagcaaacgatcaagagccattaaggacttgcc 33135438  T
Q  117 ggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaag 189  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33135439 ggaaggatgtattgccgcgatactctctcatacaactccggttgacgccggcagattctctgttgtttctaag 33135511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 33136693 - 33136772
Alignment:
Q  185 ctaagtcttttcattctgcggccgattccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgct 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33136693 ctaagtcttttcattctgcggccgattccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgct 33136772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 354
Target Start/End: Original strand, 18558273 - 18558348
Alignment:
Q  279 tccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaat 354  Q
    |||||||  ||| |||||||| |||||||| ||||| |||||||| |||||||||||||  ||||| |||||||||    
T  18558273 tccttccattgccaacgctccaaccaaaaaggctctctatctcgccctatctgatcgccccatcatgatcgacaat 18558348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 266 - 372
Target Start/End: Complemental strand, 35265623 - 35265517
Alignment:
Q  266 tcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggt 365  Q
    |||||||| | |||||||| | ||| ||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||||||  ||| |||||||||    
T  35265623 tcatctcacactctccttcacttgccaacgctcctaccaaaaaagctctgtatctcgctctctctgatcgtcctatcatcatcgatcatgataaaaaggt 35265524  T
Q  366 attcttc 372  Q
    |||||||    
T  35265523 attcttc 35265517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 398
Target Start/End: Complemental strand, 35228687 - 35228584
Alignment:
Q  297 tcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcat--tatctaccaatttcttgaat 394  Q
    |||||||||||||| ||| ||| | |||||||||||||||| |||||||||||||||||||||||||||||| ||| |  || || ||||||||| ||||    
T  35228687 tcctaccaaaaaagatctctatattgctctatctgatcgccctatcatcatcgacaatggtaaaaaggtatttttcttcctaactgccaatttctcgaat 35228588  T
Q  395 atta 398  Q
    ||||    
T  35228587 atta 35228584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 355
Target Start/End: Complemental strand, 35193291 - 35193052
Alignment:
Q  116 cggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgcggccgattccga 215  Q
    |||||||||| ||| | || ||| ||||||  |||||||||| ||| ||||||||  |||| |||||||| ||| |||| |  ||||| |||||||| ||    
T  35193291 cggaaggatgcatttccgccataatctctcgcacaactccggctgatgccggcagactctccgttgtttccaagactttcctatctgcagccgattctga 35193192  T
Q  216 cacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctt 315  Q
    | | || |||||||  |||||  ||||| || ||||   |||   | ||||||||||| | ||||| |||| ||| || |  ||  |||||||||||||     
T  35193191 cgccgtctggaatcaatttctcccttccgattctcatttcatcgactctatcatctcacactctccatcccttgctaatgtaccatccaaaaaagctctg 35193092  T
Q  316 tatctcgctctatctgatcgccatatcatcatcgacaatg 355  Q
    ||||||||||| ||||||| || |||||||||||||||||    
T  35193091 tatctcgctctctctgatctccctatcatcatcgacaatg 35193052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 35295026 - 35295096
Alignment:
Q  297 tcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtat 367  Q
    |||||||||||| | |||||||||||| ||||||||||||| ||| ||||| ||| |||||||||||||||    
T  35295026 tcctaccaaaaaggatctttatctcgccctatctgatcgccctataatcattgaccatggtaaaaaggtat 35295096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 104 - 229
Target Start/End: Complemental strand, 35203654 - 35203529
Alignment:
Q  104 ttgaggacttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgc 203  Q
    ||||||| |||||||||||||| ||| | || || |||||||  |||||||||| ||||||||||||  |||| |||||||| ||| |  ||| ||||||    
T  35203654 ttgaggaattgccggaaggatgcatttccgccattctctctcgcacaactccggctgacgccggcagactctccgttgtttccaagacaattctttctgc 35203555  T
Q  204 ggccgattccgacacggtgtggaatc 229  Q
     |||||||||||| | || |||||||    
T  35203554 cgccgattccgacgccgtctggaatc 35203529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 35273155 - 35273046
Alignment:
Q  263 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 362  Q
    |||| |||||| | |||||||||| | | |||  |||||||||||| | ||| ||||| |||||||||||||||| | ||||||||||  ||| ||||||    
T  35273155 ctattatctcacactctccttcccttaccaacattcctaccaaaaaggatctctatcttgctctatctgatcgccctgtcatcatcgatcatgataaaaa 35273056  T
Q  363 ggtattcttc 372  Q
    ||||||||||    
T  35273055 ggtattcttc 35273046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 400
Target Start/End: Complemental strand, 35477207 - 35477083
Alignment:
Q  278 ctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttcattat 377  Q
    ||||||||  ||| ||| |||| ||||| || ||||| | |||| |||||||||| |||| ||||||||||||||||| | |||||||||||||| ||||    
T  35477207 ctccttccattgccaacactccaaccaagaaggctctctttctcactctatctgaccgccctatcatcatcgacaatgctcaaaaggtattcttctttat 35477108  T
Q  378 --ctaccaatttcttgaatattagg 400  Q
      |  ||||||| ||||||||||||    
T  35477107 aacctccaattttttgaatattagg 35477083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 367
Target Start/End: Complemental strand, 45534643 - 45534578
Alignment:
Q  302 ccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtat 367  Q
    ||||||| ||||||||||| |||||||||||||  | |||||||||||||||||| ||||||||||    
T  45534643 ccaaaaaggctctttatcttgctctatctgatcaacctatcatcatcgacaatggcaaaaaggtat 45534578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 35203478 - 35203398
Alignment:
Q  292 aacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtattcttc 372  Q
    |||| ||| ||||||||| |||| ||||| ||||| ||||||  || ||||||||||||||||| | ||||||||||||||    
T  35203478 aacgttccaaccaaaaaatctctgtatctagctctctctgattcccctatcatcatcgacaatgatcaaaaggtattcttc 35203398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 346
Target Start/End: Complemental strand, 35254340 - 35254098
Alignment:
Q  104 ttgaggacttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgc 203  Q
    ||||||| |||||||||| |||| |||| ||||||||||||| ||| |||||  ||||||||| |||| ||||| | || || ||  |||| | ||||||    
T  35254340 ttgaggaattgccggaagaatgtgttgccgcgatactctctcgtaccactccttttgacgccgtcaggctctctctcgtctccaaaactttccgttctgc 35254241  T
Q  204 ggccgattccgacacggtgtggaatcgttttctgacttcccatcctcaaggcataaccgctatcatctcaaattctccttcccatgcaaacgctcctacc 303  Q
     ||| ||||||||   || |||||||  |||||  ||||| || | |||  |||   | || |||||||  | | |||||||| ||| || ||| | |||    
T  35254240 cgccaattccgacgaagtatggaatcaatttctcccttccgattcccaattcatcgacactgtcatctcccaatttccttcccttgccaatgcttccacc 35254141  T
Q  304 aaaaaagctctttatctcgctctatctgatcgccatatcatca 346  Q
    ||||| | ||| |||||||||||||||||| ||| ||||||||    
T  35254140 aaaaaggatctctatctcgctctatctgattgccgtatcatca 35254098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 367
Target Start/End: Complemental strand, 35223056 - 35222953
Alignment:
Q  264 tatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaag 363  Q
    |||||| ||| | |||||||||  |||||||  |||||| |||||  |||| ||||| || || ||| ||| || ||||||||||||| |||||||||||    
T  35223056 tatcatatcacactctccttcctttgcaaacattcctacaaaaaagtctctctatcttgccctctctaatcaccctatcatcatcgacgatggtaaaaag 35222957  T
Q  364 gtat 367  Q
    ||||    
T  35222956 gtat 35222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 368
Target Start/End: Original strand, 35146144 - 35146233
Alignment:
Q  279 tccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaaggtatt 368  Q
    |||||||| ||| |||  ||| |||||||| ||||| ||||||||||| | |||||  | ||||||||||||  ||||| ||||||||||    
T  35146144 tccttcccttgccaacattccaaccaaaaaggctctctatctcgctctctatgatcatcctatcatcatcgatcatggtcaaaaggtatt 35146233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 236
Target Start/End: Complemental strand, 45534785 - 45534700
Alignment:
Q  151 actccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgcggccgattccgacacggtgtggaatcgttttct 236  Q
    ||||||||||||||||| || |||||||| || || ||| |||| |||||||| |||  ||||||| | || ||||||| ||||||    
T  45534785 actccggttgacgccggtagattctctgtcgtgtccaagactttccattctgccgccagttccgacgccgtctggaatcattttct 45534700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 263 - 367
Target Start/End: Complemental strand, 45527079 - 45526975
Alignment:
Q  263 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 362  Q
    ||||||||||| | || ||||| |  ||||| |||||| ||||||| ||||| |||||  | ||||| ||||| | ||||||||||||| |||  |||||    
T  45527079 ctatcatctcacagtcaccttctctagcaaatgctccttccaaaaaggctctctatcttaccctatccgatcgacctatcatcatcgacgatgccaaaaa 45526980  T
Q  363 ggtat 367  Q
    |||||    
T  45526979 ggtat 45526975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 898643 - 898751
Alignment:
Q  263 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 362  Q
    ||||||||||| |||||||||||| ||| |||||||| |||||||| || || ||||||||||| || ||| |||  |||||||||||  |||||  |||    
T  898643 ctatcatctcacattctccttcccttgccaacgctcccaccaaaaaggccctctatctcgctctctccgatagcccaatcatcatcgatcatggtcgaaa 898742  T
Q  363 ggtattctt 371  Q
    |||||||||    
T  898743 ggtattctt 898751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 17663382 - 17663513
Alignment:
Q  112 ttgccggaaggatgtattgcggcgatactctctcatacaactccggttgacgccggcaggttctctgttgtttctaagtcttttcattctgcggccgatt 211  Q
    ||||| ||||| || || ||| ||||||| |||  ||||||||||||||||||  ||||| ||||| |  |||| |||||||| | |||||| |||||||    
T  17663382 ttgcctgaagggtgcatcgcgacgatactatcttgtacaactccggttgacgcttgcaggctctctatcctttcaaagtctttccgttctgcagccgatt 17663481  T
Q  212 ccgacacggtgtggaatcgttttctgacttcc 243  Q
    ||||||| || ||| | |||||||||| ||||    
T  17663482 ccgacaccgtctgggaccgttttctgatttcc 17663513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 17663518 - 17663623
Alignment:
Q  263 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 362  Q
    ||||||||| | | ||||||||||  |||||| ||  ||||||||||| ||| ||  | |||||||||||||||| ||||||||||||| | |||| |||    
T  17663518 ctatcatcttacaatctccttccctggcaaacacttttaccaaaaaagatctctacatggctctatctgatcgccctatcatcatcgaccagggtacaaa 17663617  T
Q  363 ggtatt 368  Q
    ||||||    
T  17663618 ggtatt 17663623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 368
Target Start/End: Original strand, 19246173 - 19246278
Alignment:
Q  263 ctatcatctcaaattctccttcccatgcaaacgctcctaccaaaaaagctctttatctcgctctatctgatcgccatatcatcatcgacaatggtaaaaa 362  Q
    ||||||||| | | |||||||| |  |||||| ||  ||||||||||| ||| ||  | |||||||||||||||| ||||||||||||  | |||| |||    
T  19246173 ctatcatcttacaatctccttcactggcaaacacttttaccaaaaaagatctctacatggctctatctgatcgccctatcatcatcgatcagggtacaaa 19246272  T
Q  363 ggtatt 368  Q
    ||||||    
T  19246273 ggtatt 19246278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University