View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21276_low_9 (Length: 484)

Name: NF21276_low_9
Description: NF21276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21276_low_9
NF21276_low_9
[»] chr2 (11 HSPs)
chr2 (9-237)||(43559588-43559811)
chr2 (10-116)||(33226606-33226712)
chr2 (229-325)||(43559440-43559537)
chr2 (365-466)||(43559337-43559440)
chr2 (11-203)||(19865862-19866052)
chr2 (11-203)||(19870763-19870953)
chr2 (11-203)||(19875664-19875854)
chr2 (25-193)||(18061117-18061285)
chr2 (124-203)||(33226769-33226849)
chr2 (130-193)||(5608488-5608551)
chr2 (25-184)||(45040067-45040225)
[»] chr5 (4 HSPs)
chr5 (9-214)||(29790549-29790752)
chr5 (9-183)||(35951901-35952076)
chr5 (9-184)||(33140280-33140454)
chr5 (19-175)||(15471061-15471217)
[»] chr8 (8 HSPs)
chr8 (9-174)||(42664126-42664290)
chr8 (55-194)||(25246984-25247122)
chr8 (11-184)||(33828216-33828389)
chr8 (25-203)||(41877408-41877587)
chr8 (9-183)||(29191070-29191245)
chr8 (25-172)||(16366782-16366929)
chr8 (130-182)||(10208042-10208094)
chr8 (130-194)||(26534377-26534441)
[»] chr4 (8 HSPs)
chr4 (9-193)||(55250445-55250629)
chr4 (18-203)||(47668890-47669075)
chr4 (12-183)||(35466419-35466591)
chr4 (11-194)||(1101062-1101244)
chr4 (11-186)||(29857378-29857553)
chr4 (9-97)||(20447741-20447829)
chr4 (130-183)||(1838572-1838625)
chr4 (133-184)||(46963774-46963824)
[»] chr3 (11 HSPs)
chr3 (9-184)||(39650417-39650592)
chr3 (11-203)||(45483744-45483933)
chr3 (26-182)||(33087858-33088013)
chr3 (9-182)||(26445930-26446103)
chr3 (130-186)||(570948-571004)
chr3 (25-184)||(46091799-46091958)
chr3 (9-112)||(29952832-29952936)
chr3 (9-112)||(30001986-30002090)
chr3 (10-182)||(28146763-28146938)
chr3 (9-67)||(49754263-49754321)
chr3 (10-111)||(28050706-28050807)
[»] chr1 (5 HSPs)
chr1 (9-102)||(41335965-41336058)
chr1 (29-201)||(44508214-44508386)
chr1 (9-182)||(15962314-15962488)
chr1 (60-184)||(7093534-7093657)
chr1 (144-213)||(32853616-32853685)
[»] scaffold0005 (1 HSPs)
scaffold0005 (11-184)||(270248-270420)
[»] chr7 (6 HSPs)
chr7 (55-183)||(47235884-47236011)
chr7 (25-184)||(19910109-19910265)
chr7 (134-213)||(34821185-34821264)
chr7 (130-205)||(6036747-6036822)
chr7 (26-98)||(28086248-28086320)
chr7 (34-98)||(6036854-6036918)
[»] chr6 (4 HSPs)
chr6 (9-177)||(20921333-20921503)
chr6 (9-186)||(13325488-13325665)
chr6 (9-70)||(20902842-20902903)
chr6 (19-110)||(4017129-4017220)
[»] scaffold0406 (1 HSPs)
scaffold0406 (127-194)||(12742-12809)
[»] scaffold0258 (1 HSPs)
scaffold0258 (62-182)||(18108-18228)
[»] scaffold0257 (1 HSPs)
scaffold0257 (134-183)||(16557-16606)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 9 - 237
Target Start/End: Complemental strand, 43559811 - 43559588
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagat 108  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  43559811 cgaagaaaataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttatttataattgacactaaactaagtagat 43559712  T
Q  109 tataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaactacacaa 208  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  43559711 tataagtatttttttaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggt-agctatattcaaaaatacacaa 43559613  T
Q  209 attatatatgcaaagtttaattttctttt 237  Q
    ||    |||||||||||||||||||||||    
T  43559612 at----tatgcaaagtttaattttctttt 43559588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 33226606 - 33226712
Alignment:
Q  10 gaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatt 109  Q
    |||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  33226606 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaacaagtcaaatttatttataattgacactaaactaaatagatt 33226705  T
Q  110 ataagta 116  Q
    |||||||    
T  33226706 ataagta 33226712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 43559537 - 43559440
Alignment:
Q  229 ttttcttttaggcaagacaaacttaattattagacatcataaaaagtacggtgattagcatagaaatgggat-gctctagctaagtgttgagcaacct 325  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  43559537 tttttttttaggcaagacaaacttaattattagacatcataaaaagaacggtgattagtatagaaatgggatggctctagctaagtgttgagcaacct 43559440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 365 - 466
Target Start/End: Complemental strand, 43559440 - 43559337
Alignment:
Q  365 tcacaatctcccaattcaatcatggaaaaagaggaattgtttatccaatatgactcattgaatggaatgggcaagctgctgca--tttctgtgaggtcca 462  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  | |||||||||||||    
T  43559440 tcacaatctcccaattcaatcattgataaagaggaattgtttatccaatatgactcattgaattgaatgggcaagctgctgcatgtctctgtgaggtcca 43559341  T
Q  463 gttt 466  Q
    ||||    
T  43559340 gttt 43559337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 19866052 - 19865862
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||| |||||||||||||||||||||||||| || |||||||||||   |||| |||||||| ||||||||| |||||||||| |||||||    
T  19866052 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtcaaatttatctataattgatactaaactaaatagatta 19865956  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaac-aaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaacta 203  Q
    |   ||        | || |||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||| || ||||||||    
T  19865955 tctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaacta 19865862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 19870953 - 19870763
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||| |||||||||||||||||||||||||| || |||||||||||   |||| |||||||| ||||||||| |||||||||| |||||||    
T  19870953 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtcaaatttatctataattgatactaaactaaatagatta 19870857  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaac-aaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaacta 203  Q
    |   ||        | || |||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||| || ||||||||    
T  19870856 tctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaacta 19870763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 19875854 - 19875664
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||| |||||||||||||||||||||||||| || |||||||||||   |||| |||||||| ||||||||| |||||||||| |||||||    
T  19875854 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagtttt---aagtcaaatttatctataattgatactaaactaaatagatta 19875758  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaac-aaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaacta 203  Q
    |   ||        | || |||  ||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||| || ||||||||    
T  19875757 tctatattttattgatatcatccttctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaacta 19875664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 193
Target Start/End: Original strand, 18061117 - 18061285
Alignment:
Q  25 taacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnna 124  Q
    |||||||| |||||||||||| |||  || |||  |||||||| |||| ||||||||| ||||| ||||||||||||| |||||||| | ||       |    
T  18061117 taacaatagttatttataaaatttgagctatatagagttttaagaagtcaaatttattcataatggacactaaactaaatagattattaatattatttta 18061216  T
Q  125 aaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctata 193  Q
    | |  |||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||  |||||||    
T  18061217 atagcatctctctttgaaccaaccaaattgtttggagtaaccaaataatatattaatggggtagctata 18061285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 33226769 - 33226849
Alignment:
Q  124 aaaataatctctctttaaaccaacaaaattgtttggagtagccaaataat-atattaatgggtaagctatattcaaaacta 203  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| ||  |||||||||||||||||    
T  33226769 aaaataatctctctttaaaccgataaaattgtttggagtagccaaataataatattaatagggtagctatattcaaaacta 33226849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 5608551 - 5608488
Alignment:
Q  130 atctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctata 193  Q
    ||||| ||||||||||||||||||| || | ||| ||||||||||||||||||||| |||||||    
T  5608551 atctccctttaaaccaacaaaattgattagggtaaccaaataatatattaatgggttagctata 5608488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 45040067 - 45040225
Alignment:
Q  25 taacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnna 124  Q
    |||||||| |||||| |||||  ||  || |||| |||||||| |||  |||||||| ||||||||| |||||||||| |||||||| | |        |    
T  45040067 taacaatagttatttgtaaaatatgagctctatggagttttaagaagacaaatttatctataattgatactaaactaaatagattatcaat-ttttgtta 45040165  T
Q  125 aaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    | ||||| ||||||| || |||||||||||||||||||  | ||||||||||||||||||    
T  45040166 atataatatctctttgaaacaacaaaattgtttggagtgactaaataatatattaatggg 45040225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 214
Target Start/End: Complemental strand, 29790752 - 29790549
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagat 108  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||| |||||    
T  29790752 cgaagaaaataaaatctaacaataattatttataaaagttgtactttatgaagttttaacaagtcaaatttacttataattgacactagactaaatagat 29790653  T
Q  109 tataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaactacacaa 208  Q
    ||||||||       ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| |  ||||| ||||||||||| || |    
T  29790652 tataagta--tttttaaaatcatctctttttaaaccaacaaaattgtttggagtggccaaataatatattaatgtggtagctacattcaaaactatacta 29790555  T
Q  209 attata 214  Q
    ||||||    
T  29790554 attata 29790549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 35951901 - 35952076
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| ||||| ||||||||||||||||  ||||||  |||| ||| || ||||||||||  ||||||||||||||||||| || |    
T  35951901 cgaagaaaataaaagttaaacaatagttatttataaaagttgagctttatagagttgtaagaactaaaatttatccataattgacactaaactaaatata 35952000  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgg 183  Q
    |||| | ||       || || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  35952001 ttatcaatatttgttcaatatcatctctttttaaaccaacaaaattgtttggagtagccaaataatatatcaatgg 35952076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 184
Target Start/End: Original strand, 33140280 - 33140454
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| ||||| |||||||||||| |||  ||||||| |||| ||| || | ||||||||  |||||||||||||  |||| || |    
T  33140280 cgaagaaaataaaagttaaacaatagttatttataaaatttgagctttatggagttgtaagaacttaaatttatccataattgacacta--ctaaatata 33140377  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    ||||   ||       || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33140378 ttatcgatacttgtgcaatatcatctctctttaaaccaataaaattgtttggagtagccaaataatatattaatggg 33140454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 15471061 - 15471217
Alignment:
Q  19 aaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtann 118  Q
    |||| |||||| || ||||||||||||||||  || ||   |||||| | || | ||||||||  ||||||||||||||||||| |||||||| | ||      
T  15471061 aaaagttaacattagttatttataaaagttgagctctaatgagtttttagaattcaaatttatccataattgacactaaactaaatagattatcaatatt 15471160  T
Q  119 nnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatat 175  Q
         |  || |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  15471161 tttgtattatcatctctgttttaaccaacaaaattgtttggagtaaccaaataatat 15471217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 7e-47; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 9 - 174
Target Start/End: Original strand, 42664126 - 42664290
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagat 108  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||| |||||    
T  42664126 cgaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaaaaagtcaaatttatttataattgacactaaactaaatagat 42664225  T
Q  109 tataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataata 174  Q
    ||||||||       ||||| | | || |||||||||||||||||||||||||| |||||||||||    
T  42664226 tataagta-ttttttaaaatcaccactttttaaaccaacaaaattgtttggagtggccaaataata 42664290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 55 - 194
Target Start/End: Original strand, 25246984 - 25247122
Alignment:
Q  55 tatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnnaaaataatctctctttaaaccaacaaaattg 154  Q
    |||| |||||||| |||  |||||||| |||||||||||||||||||| || ||||| | |        || ||||| |||||||||| |||||||||||    
T  25246984 tatggagttttaagaagacaaatttatctataattgacactaaactaaatatattatcaat-ttttgttaatataatatctctttaaatcaacaaaattg 25247082  T
Q  155 tttggagtagccaaataatatattaatgggtaagctatat 194  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  25247083 tttggagtagccaaataatatattaatggggtagctatat 25247122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 33828389 - 33828216
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||  |||||||| ||||||||||||||||  || || | |||||| | |||| ||||||||  ||||||||||||||||||| |||||||    
T  33828389 aagaaaataaaagctaacaatagttatttataaaagttgagctctaaggagtttttagaagtcaaatttatccataattgacactaaactaaatagatta 33828290  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    | | ||       || || |||| | ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  33828289 tcaatatttttataatatcatctttattttaaccaacaaaattgtttggagtagtcaaaaaatatcttaatggg 33828216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 41877587 - 41877408
Alignment:
Q  25 taacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataa--ttgacactaaactaagtagattataagtannnnnn 122  Q
    |||||||||||||||||||||||||   ||||| ||||||||| |||| |||||||| ||||   |||||| |||||||| || ||||| | ||          
T  41877587 taacaataattatttataaaagttgagttttatcaagttttaagaagtcaaatttatatatatacttgacattaaactaaataaattattaatattttat 41877488  T
Q  123 naaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaacta 203  Q
     || ||  ||||| ||||| |||||||||||||||||||||||||| |||||||||||||||  ||||| || ||||||||    
T  41877487 taagatcgtctctttttaa-ccaacaaaattgtttggagtagccaagtaatatattaatggggtagctacatacaaaacta 41877408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 9 - 183
Target Start/End: Original strand, 29191070 - 29191245
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| ||||| ||| ||||||||||||  ||||||  |||| ||| || | ||||||||  ||||||||||| ||||||| || |    
T  29191070 cgaagaaaataaaagttaaacaatagttagttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatata 29191169  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgg 183  Q
     ||| | ||       || || |||||| |||||||||||||||||||||||||||| ||||||||||||||||||    
T  29191170 ctatcaatatttgtgcaatatcatctctttttaaaccaacaaaattgtttggagtaggcaaataatatattaatgg 29191245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 16366782 - 16366929
Alignment:
Q  25 taacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnna 124  Q
    |||||||| ||||||||||||||||  |  || |||||||| | || | |||||||| ||||||| |||||||||||| |||||||| | ||       |    
T  16366782 taacaatagttatttataaaagttgagccctaagaagtttttaaaattcaaatttatctataattaacactaaactaaatagattatcaatatttttata 16366881  T
Q  125 aaataatctctctttaaaccaacaaaattgtttggagtagccaaataa 172  Q
    | || |||||| ||| |||||||||||||||||||||||| |||||||    
T  16366882 atatcatctctattttaaccaacaaaattgtttggagtagtcaaataa 16366929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 10208042 - 10208094
Alignment:
Q  130 atctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatg 182  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||    
T  10208042 atctctctttaaaccaacaaaattgtttggagtagtcaaacaatatatcaatg 10208094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 26534441 - 26534377
Alignment:
Q  130 atctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatat 194  Q
    |||||| ||| ||||||||||||||||||||||  ||||||||||| ||||||||  ||||||||    
T  26534441 atctctattttaaccaacaaaattgtttggagtgaccaaataatatcttaatggggtagctatat 26534377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 193
Target Start/End: Complemental strand, 55250629 - 55250445
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagat 108  Q
    |||||||  |||||| ||||||||||||||||| |||||||  || ||| || |||||| |||| |||||||| |||||||||||||||||||| |||||    
T  55250629 cgaagaaactaaaatctaacaataattatttattaaagttgagctatataaaattttaagaagtcaaatttatctataattgacactaaactaaatagat 55250530  T
Q  109 tataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctata 193  Q
    ||| | ||       || || ||| |||||| |||||||||||||||||| ||||| |||||||||||||||||||  |||||||    
T  55250529 tatcaatattttattaacattatccctctttgaaccaacaaaattgtttgaagtagtcaaataatatattaatggggtagctata 55250445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 47668890 - 47669075
Alignment:
Q  18 taaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtan 117  Q
    |||||| |||| || ||||||||||||||||| ||| ||| ||||||||| || | |||||||| |||||||||||||||| ||| |||||||| | ||     
T  47668890 taaaatctaacgatgattatttataaaagttgaactctataaagttttaagaaatcaaatttatctataattgacactaaattaaatagattatcaatat 47668989  T
Q  118 nnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaacta 203  Q
          || || |||  |||||||||||||||||||||| ||||||| |||||||||||||||||||  ||| |||| ||||||||    
T  47668990 tttattaacattatccatctttaaaccaacaaaattgttcggagtagtcaaataatatattaatggggtagccatatacaaaacta 47669075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 35466591 - 35466419
Alignment:
Q  12 agaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattat 111  Q
    |||| |||||||  ||||||||||||| |||||||||||||| ||| |||||  ||||||| |||||||||| |||||||||||||||||| ||||||||    
T  35466591 agaaaataaaatcgaacaataattattcataaaagttgtactctataaagttaaaacaagtcaaatttatttctaattgacactaaactaaatagattat 35466492  T
Q  112 aagta-nnnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgg 183  Q
    |||||        ||||| |||| |||||||||||||||||| ||||| | ||  ||| ||||||||||||||    
T  35466491 aagtattttattaaaaatcatctttctttaaaccaacaaaatcgtttgaaataatcaagtaatatattaatgg 35466419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 1101062 - 1101244
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||  || ||||| |||||| |||||| ||  || |||  |||||||| |||  |||||||| |||| ||||||||||||||| |||||||    
T  1101062 aagaaaataaaagctaccaatagttatttgtaaaagatgagctctattgagttttaagaagacaaatttatctatagttgacactaaactaaatagatta 1101161  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatat 194  Q
    | | |        || ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||  ||||||||    
T  1101162 tcaat-ttttgttaatataatatctctttgaaccaactaaattgtttggagtagccaaataatatattaatgggggagctatat 1101244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 29857378 - 29857553
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| |||||| ||||||||| ||| ||||||||||||  |||||   |||||| | |||| || |||||  |||||| |||||||||||| |||||||    
T  29857378 aagaaaataaaagttaacaatagttacttataaaagttgagctttaaagagtttttagaagtcaattttatccataattaacactaaactaaatagatta 29857477  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggta 186  Q
    | | ||       | ||| |||||| ||| ||||||||||||| |||||||| |||| ||||||| |||| |||||    
T  29857478 tcaatatttttatagaatcatctctgttttaaccaacaaaattatttggagtggccagataatatcttaacgggta 29857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 20447741 - 20447829
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaa 97  Q
    |||||||  |||||| |||||||||||||||||||||||||  || ||||| ||| ||| |||| |||||||| | |||||||||||||    
T  20447741 cgaagaaactaaaatctaacaataattatttataaaagttgagctctatgatgttgtaagaagtcaaatttatctttaattgacactaa 20447829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 1838625 - 1838572
Alignment:
Q  130 atctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgg 183  Q
    ||||||| || | |||||||||||||||||||||| ||||||||||||||||||    
T  1838625 atctctcattgatccaacaaaattgtttggagtagtcaaataatatattaatgg 1838572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 184
Target Start/End: Complemental strand, 46963824 - 46963774
Alignment:
Q  133 tctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||    
T  46963824 tctctttgaaccaataaaattgtttggagtagccaaat-atatattaatggg 46963774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 39650592 - 39650417
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagat 108  Q
    |||||||  |||||| ||||||  ||| ||||||||||||| ||| | | ||||||||| |||| ||||| || |||||||||| ||||| ||| |||||    
T  39650592 cgaagaaactaaaatctaacaaagattgtttataaaagttgaactctgtaaagttttaagaagtcaaattcatctataattgacgctaaattaaatagat 39650493  T
Q  109 tataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    ||| | ||       || || ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39650492 tatcaatattttattaatattatccctctttaaaccaacaaaattgtttggagtagccaagtaatatattaatggg 39650417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 45483744 - 45483933
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||| |||||||||||||||||||||||||| || |||||||||||||   || || ||||| ||||||||| |||||||||| |||||||    
T  45483744 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaa---gtcaa-tttatctataattgatactaaactaaatagatta 45483839  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaacaaaa-ttgtttggagtagccaaataatatattaatgggtaagctatattcaaaacta 203  Q
    |   ||        | || ||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||  ||||| || ||||||||    
T  45483840 tctatattttattgatatcatccctctttaaaccaacaaaaattgtttggagtagccaaataatatatcaatggggtagctacatacaaaacta 45483933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 33087858 - 33088013
Alignment:
Q  26 aacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnnaa 125  Q
    ||||||||||||||||||||||||  |||||||||||||||| ||||  ||||||| |||||||||||||||||||| |||||||| | ||       ||    
T  33087858 aacaataattatttataaaagttgagctttatgaagttttaagaagt-caatttatctataattgacactaaactaaatagattatcaatattttattaa 33087956  T
Q  126 aataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatg 182  Q
     || | |  ||||| ||| |||||||||||||| || ||||||||||||||||||||    
T  33087957 tatcacccttctttgaactaacaaaattgtttgaagaagccaaataatatattaatg 33088013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 26446103 - 26445930
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| ||||||||||||||||||||||  ||||||  |||| ||| || | ||||||||  ||||||||||| ||||||| || |    
T  26446103 cgaagaaaataaaagttaaacaataattatttataaaagttgagctttatagagttgtaagaacttaaatttatccataattgacaccaaactaaatata 26446004  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatg 182  Q
    |||| | ||       || ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  26446003 ttatcaatatttgtgcaatata-tctctttttaaaccaacaaaattgtttggagtagccagataatatattaatg 26445930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 130 - 186
Target Start/End: Complemental strand, 571004 - 570948
Alignment:
Q  130 atctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggta 186  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  571004 atctctctttaaaccaacaaaattatttggagtagccaaataatatattaatgggta 570948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 184
Target Start/End: Original strand, 46091799 - 46091958
Alignment:
Q  25 taacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnna 124  Q
    |||||||| ||||||||||| ||||  || || | ||| || | |||| ||||||||  |||||| |||||||||||| | |||||| | ||       |    
T  46091799 taacaatagttatttataaatgttgagctctaaggagtatttagaagtcaaatttatccataattaacactaaactaaatggattatcaatatttttata 46091898  T
Q  125 aaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    | || |||| | ||| |||||| |||||||||||||||||||||||||||| ||||||||    
T  46091899 atattatctatgttttaaccaataaaattgtttggagtagccaaataatatcttaatggg 46091958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 29952832 - 29952936
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| |||||||||||||||||| |||  ||||||| |||| ||  || | ||||||||  ||||||| ||||||||||| || |    
T  29952832 cgaagaaaataaaagttaaacaataattatttataaaatttgagctttatggagttgtatgaacttaaatttatccataattgtcactaaactaaatata 29952931  T
Q  108 ttata 112  Q
    |||||    
T  29952932 ttata 29952936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 30001986 - 30002090
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| |||||||||||||||||| |||  ||||||| |||| ||  || | ||||||||  ||||||| ||||||||||| || |    
T  30001986 cgaagaaaataaaagttaaacaataattatttataaaatttgagctttatggagttgtatgaacttaaatttatccataattgtcactaaactaaatata 30002085  T
Q  108 ttata 112  Q
    |||||    
T  30002086 ttata 30002090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 28146763 - 28146938
Alignment:
Q  10 gaagaatataaaatttaacaataattatttataaaagttg--tactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    |||||| ||||||  |||||||| |||| ||||||| |||  | || ||||||||||| | |||| ||| ||||  ||||||||||||||||||| ||||    
T  28146763 gaagaaaataaaagctaacaatagttatctataaaatttgagttctatatgaagttttcagaagtcaaagttatccataattgacactaaactaattaga 28146862  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaacc-aacaaaattgtttggagtagccaaataatatattaatg 182  Q
     ||| | ||       || |  |||||||||| |||| ||||||||||||||| |||  |||| ||||||||||||    
T  28146863 atatcaatatttttttaagagcatctctctttgaaccaaacaaaattgtttggcgtaatcaaacaatatattaatg 28146938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 49754321 - 49754263
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaa 67  Q
    ||||||| ||||||| ||| ||||||||||||||||||||| |||  || |||||||||    
T  49754321 cgaagaaaataaaatctaagaataattatttataaaagttgaactccataaagttttaa 49754263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 111
Target Start/End: Original strand, 28050706 - 28050807
Alignment:
Q  10 gaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatt 109  Q
    |||||| ||||||  || ||||| |||| |||||||||||   | ||||||| ||||| || | |||||||| |||||| |||| |||||||| ||||||    
T  28050706 gaagaaaataaaagctaccaatagttatctataaaagttgagttctatgaagatttaagaaattaaatttatctataatagacattaaactaaatagatt 28050805  T
Q  110 at 111  Q
    ||    
T  28050806 at 28050807  T

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Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 41336058 - 41335965
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaa 102  Q
    ||||||| ||||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||| | |||||||||||||||||||||||||||||    
T  41336058 cgaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaacttttaacaaatcaaatttatttataattgacactaaactaa 41335965  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 44508214 - 44508386
Alignment:
Q  29 aataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnnaaaat 128  Q
    |||||||||||||||||||||  || ||| ||||||||| |||| |||||||| |||||||||||||||| ||| |||||||| | ||       || ||    
T  44508214 aataattatttataaaagttgagctctataaagttttaagaagtcaaatttatctataattgacactaaattaaatagattatcaatattttattaacat 44508313  T
Q  129 aatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaac 201  Q
     ||| ||||||||||||| ||||||||||| ||||||  ||||||| |||||||||  ||||| || ||||||    
T  44508314 catccctctttaaaccaataaaattgtttgaagtagctgaataatacattaatgggatagctaaatacaaaac 44508386  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 15962488 - 15962314
Alignment:
Q  9 cgaagaatataaaatttaa-caataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| |||| | ||| ||||||||||| ||||  ||||||| |||| ||| || | |||| |||  ||||||||||||||||||| || |    
T  15962488 cgaagaaaataaaagttaaaccatagttatttataaatgttgagctttatggagttgtaagaacttaaatgtatccataattgacactaaactaaatata 15962389  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatg 182  Q
    |||| | ||       || ||  |||| ||||||||||||||||||| |||||||| ||||||||||||||||||    
T  15962388 ttatgaatatttgtgcaatatcttctccctttaaaccaacaaaattgattggagtaaccaaataatatattaatg 15962314  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 7093657 - 7093534
Alignment:
Q  60 agttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttgg 159  Q
    |||||||| |||  ||||||||  ||||||||||||||||||| |||||||| | ||       | | | |||||| ||| |||||||||||||||||||    
T  7093657 agttttaagaagacaaatttatcaataattgacactaaactaaatagattatcattatttcttgata-tcatctctgtttgaaccaacaaaattgtttgg 7093559  T
Q  160 agtagccaaataatatattaatggg 184  Q
    |||||   |||||||||||||||||    
T  7093558 agtagttcaataatatattaatggg 7093534  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 32853685 - 32853616
Alignment:
Q  144 caacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaactacacaaattat 213  Q
    ||||||||||||||||||||  || ||||||||||| |||   || || ||||||||||| |||||||||    
T  32853685 caacaaaattgtttggagtaatcatataatatattattggtgtagttacattcaaaactatacaaattat 32853616  T

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Target: scaffold0005 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 270420 - 270248
Alignment:
Q  11 aagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||||||  ||| |||| ||||||||||||||||  || || | |||||| | |||| |||||||||||||||||||||||||||||||||||||    
T  270420 aagaaaataaaagctaaaaatagttatttataaaagttgagctctaaggagtttttaaaagtcaaatttatttataattgacactaaactaagtagatta 270321  T
Q  111 taagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    | | ||       || || |||||| ||| ||||||  |||||||||| |||||||||||||||| ||||||||    
T  270320 tcaatatttttataatatcatctctgttttaaccaa-taaattgtttgaagtagccaaataatatcttaatggg 270248  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 55 - 183
Target Start/End: Complemental strand, 47236011 - 47235884
Alignment:
Q  55 tatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnnaaaataatctctctttaaaccaacaaaattg 154  Q
    |||| |||||||| |||  |||||||| |||||||||||||||||||| |||||||| | |        || ||||| |||||||||| |||||||||||    
T  47236011 tatggagttttaagaagacaaatttatctataattgacactaaactaaatagattatcaat-ttttgttaatataatatctctttaaatcaacaaaattg 47235913  T
Q  155 tttggagtagccaaataatatattaatgg 183  Q
    |||||| ||||||||||||||||||||||    
T  47235912 tttggaatagccaaataatatattaatgg 47235884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 184
Target Start/End: Complemental strand, 19910265 - 19910109
Alignment:
Q  25 taacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnna 124  Q
    |||||||| ||||||||||||||||| || || |  ||||| | |||| ||||||||  ||||   ||||||||| || |||||||| | ||       |    
T  19910265 taacaatagttatttataaaagttgtgctctaaggtgtttttagaagtcaaatttatccataa---acactaaacaaaatagattatcaatatttttata 19910169  T
Q  125 aaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatggg 184  Q
    | || |||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  19910168 atatcatctctgttttaaccaacaaaattgtttggagtagccaaataatattttaatggg 19910109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 34821185 - 34821264
Alignment:
Q  134 ctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaactacacaaattat 213  Q
    ||||||||||||||||||||||||||||||  ||| |||||||| ||||||  ||||| || |||||||| || ||||||    
T  34821185 ctctttaaaccaacaaaattgtttggagtaatcaagtaatatatcaatggggtagctacatacaaaactatactaattat 34821264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 6036822 - 6036747
Alignment:
Q  130 atctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatattcaaaactaca 205  Q
    ||||| |||| |||||||||||||||||||||||||| |||||||  ||||||||  ||||| ||  |||||||||    
T  6036822 atctccctttgaaccaacaaaattgtttggagtagccgaataataatttaatggggtagctacatataaaactaca 6036747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 28086248 - 28086320
Alignment:
Q  26 aacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaa 98  Q
    ||||||| ||||||||||||||||  ||||| |||||| ||| || | ||||||||| |||||||||| ||||    
T  28086248 aacaatagttatttataaaagttgagctttacgaagttgtaagaacttaaatttattcataattgacaataaa 28086320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 6036918 - 6036854
Alignment:
Q  34 ttatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaa 98  Q
    |||||||||||||||| ||| |||  |||||||| |||||||||||||  ||||||| || ||||    
T  6036918 ttatttataaaagttgaactctattgagttttaagaagtaaaatttatccataattgtcattaaa 6036854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 177
Target Start/End: Complemental strand, 20921503 - 20921333
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagat 108  Q
    ||||||| ||||||| ||||||  ||||| |||| |||||| ||| |||||| |||||| || | ||||||||||||||||||||||||||||| |||||    
T  20921503 cgaagaaaataaaatctaacaaatattatgtatagaagttgaactctatgaatttttaaaaa-tcaaatttatttataattgacactaaactaaatagat 20921405  T
Q  109 tataagta----nnnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatat 177  Q
    | ||||||           ||||  |||||| |||||||||||||||||||||  ||||||||| ||||||||    
T  20921404 t-taagtatttttttttttaaaagcatctctatttaaaccaacaaaattgtttaaagtagccaagtaatatat 20921333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 13325488 - 13325665
Alignment:
Q  9 cgaagaatataaaatttaac-aataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtaga 107  Q
    ||||||| |||||| ||||  |||| |||||||||||| ||  |||||||| |||| ||| || | |||||||| ||||||| |||||||||||| || |    
T  13325488 cgaagaaaataaaagttaaataatagttatttataaaaatttaactttatggagttataagaacttaaatttatctataatttacactaaactaaatata 13325587  T
Q  108 ttataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggta 186  Q
    |||| | ||       | | | |||||||||||||||| ||||||||||   |||| ||||||||||||||||||||||    
T  13325588 ttattattatttgtgcata-tcatctctctttaaaccatcaaaattgttaaaagtaaccaaataatatattaatgggta 13325665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 20902903 - 20902842
Alignment:
Q  9 cgaagaatataaaatttaacaataattatttataaaagttgtactttatgaagttttaacaa 70  Q
    ||||||| ||||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||    
T  20902903 cgaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaagttttaacaa 20902842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 4017220 - 4017129
Alignment:
Q  19 aaaatttaacaataattatttataaaagttgtactttatgaagttttaacaagtaaaatttatttataattgacactaaactaagtagatta 110  Q
    ||||| ||| || ||||||||||||||||||   | |||  |||||| | |||| ||||||||| |||||| |||||||||||| |||||||    
T  4017220 aaaatctaaaaaaaattatttataaaagttgagttctatcgagttttcagaagtcaaatttattcataattaacactaaactaaatagatta 4017129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 127 - 194
Target Start/End: Original strand, 12742 - 12809
Alignment:
Q  127 ataatctctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgggtaagctatat 194  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||||||| |||||  ||||||||    
T  12742 ataatatctctttgaaccaacaaaattgtttggagtagcaaaataatatattcatggggtagctatat 12809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 62 - 182
Target Start/End: Original strand, 18108 - 18228
Alignment:
Q  62 ttttaacaagtaaaatttatttataattgacactaaactaagtagattataagtannnnnnnaaaataatctctctttaaaccaacaaaattgtttggag 161  Q
    |||||| |||||||||| || ||||||||||| |||||||| || ||||| | ||       || || ||||  |||||||||||||||||| |||||||    
T  18108 ttttaagaagtaaaattcatctataattgacaataaactaaatatattattaatatttgtgtaatatcatcttcctttaaaccaacaaaattatttggag 18207  T
Q  162 tagccaaataatatattaatg 182  Q
    ||| |||||||||||||||||    
T  18208 tagacaaataatatattaatg 18228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 16557 - 16606
Alignment:
Q  134 ctctttaaaccaacaaaattgtttggagtagccaaataatatattaatgg 183  Q
    ||||||||||||||||||||||||||||||   |||||||| ||||||||    
T  16557 ctctttaaaccaacaaaattgtttggagtaattaaataatacattaatgg 16606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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