View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_high_1 (Length: 634)
Name: NF21277_high_1
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 16 - 613
Target Start/End: Original strand, 7949248 - 7949852
Alignment:
| Q |
16 |
ggagagacggtttcaaatgcgggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtaaaataannnnnnnnnnn--------ataat |
107 |
Q |
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| T |
7949248 |
ggagagacggcttcaaatgtgggggttggaacttgtaagtgtcttggcatggttgtcactttattttgtataataatttattttattttatttttataac |
7949347 |
T |
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| Q |
108 |
tgacgagccta-aggcgacatctataatatataaatgaaaaagtgtaacacaaaagagaggg-ggcaaaaccaaaccatcaaaggaacattaacaaaatc |
205 |
Q |
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| T |
7949348 |
tgatgagccttgaggcgacatctataatatataaatgaaaaattgtaatacaaaagagagggtggcaaaaccaaaccctcaaaggaacattaacaaaatc |
7949447 |
T |
|
| Q |
206 |
gaaagttgggaagacctagcttgttcctacctaggtcccctctaattacaattgaaggaaaggaccaccaagtgaaatcaacaatagataagcctaagtt |
305 |
Q |
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| T |
7949448 |
gaaagttgggaagacctagcttattcctacctaggtcccctctaattataattggaggaaaggaccac-aagtgaaatcagcaatagataagcctaagtt |
7949546 |
T |
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| Q |
306 |
tgcaagtttgtcagcacagtgatttccttctctgtaaatatgagacaggatgaattgcatagattgaagctttccaacacagttgttccatctattcttt |
405 |
Q |
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| T |
7949547 |
tgcaagtttgtcagcacgatgattttcttctctgtaaatatgagacaagatgaattgcatagattgaagctttccaacacagttgttccatctattcttt |
7949646 |
T |
|
| Q |
406 |
aatttccaaggaactatagagggtgacttgatggccaaggtagctatcttggagtcagtctctatccaaaggtgatgccagtttttatcaaaagcaattt |
505 |
Q |
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| T |
7949647 |
aatttccaaggaactatagagggtgacttgatggccaacgtagctatcttggagtcagtctctatccaaaggtgatgccattttttatcaaaaacaattt |
7949746 |
T |
|
| Q |
506 |
caacagccataataatacccattaattcagcatgtaaagagttaacaataccgatgtttgcagcaaaacatcctttggagtcaccctgattgtttctgaa |
605 |
Q |
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| T |
7949747 |
caacagccataataatacctattaattcagcatgtaaagagttagcaataccgatgtt--cagcaaaacatcctttggagtcaccctgattgtttctgaa |
7949844 |
T |
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| Q |
606 |
gatgccag |
613 |
Q |
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| T |
7949845 |
gattccag |
7949852 |
T |
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