View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_high_13 (Length: 250)
Name: NF21277_high_13
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42186821 - 42186593
Alignment:
| Q |
1 |
tttttaaattatggcagcacagcatgattctgccgaactcaccaccaatccgaacatgcactaacatgaaatttttccagttttgatattattggttact |
100 |
Q |
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| T |
42186821 |
tttttaaattgtggcagcacaccatgattctgccgaactcaccaccaatccgaacatgcactaacatgaaatttttccagttttgatattattggttact |
42186722 |
T |
|
| Q |
101 |
tgtcactgctatctttcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatca |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186721 |
tgtcactgctatctttcttacctcttcaggagaaaccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatca |
42186622 |
T |
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| Q |
201 |
gtcatgtgatgagcatcacatgttatggc |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
42186621 |
gtcatgtgatgagcatcacatgttatggc |
42186593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 42196470 - 42196367
Alignment:
| Q |
118 |
ttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagcatc |
217 |
Q |
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||||||||||||| || ||||| |||| |||||||| |||||||||||||||||| || || ||||||||||| || ||||||||||||||||||||||| |
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| T |
42196470 |
ttacctcttcaggggaaaccccggcattttctaaactcttgtttatgcaagatgaaacaccaagtccatcagaccttggatcagtcatgtgatgagcatc |
42196371 |
T |
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| Q |
218 |
acat |
221 |
Q |
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|||| |
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| T |
42196370 |
acat |
42196367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 42203874 - 42203761
Alignment:
| Q |
116 |
tcttacctcttcaggagataccccagcatcttctaaacccttgtttatgcaagatgatactcctagtccatcagatctaggatcagtcatgtgatgagca |
215 |
Q |
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||||||||||| ||| || ||||||||||||| ||||| |||| |||||||||| || ||| |||||||||| | |||| |||||| ||||||||| |
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| T |
42203874 |
tcttacctcttgaggggaaaccccagcatcttgtaaactcttgcttatgcaagaggactgtccaagtccatcaggcattggattagtcatatgatgagca |
42203775 |
T |
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| Q |
216 |
tcacatgttatggc |
229 |
Q |
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|||||||||||||| |
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| T |
42203774 |
tcacatgttatggc |
42203761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 46610573 - 46610613
Alignment:
| Q |
180 |
agtccatcagatctaggatcagtcatgtgatgagcatcaca |
220 |
Q |
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||||| |||||||| |||||||||||||||| ||||||||| |
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| T |
46610573 |
agtccgtcagatcttggatcagtcatgtgataagcatcaca |
46610613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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