View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_high_16 (Length: 238)
Name: NF21277_high_16
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37633225 - 37633446
Alignment:
| Q |
1 |
actattatttgcatttaaattgttaggttttgcagtcatatattatctaaatatatattgattcaaatatacgcacttgatcattatttaatctaagagg |
100 |
Q |
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| T |
37633225 |
actattatttgcatttaaattgttaggttttgcagtcgtatattatctaaatatatattgattcgaatatacgcgtttgatcattatttaatttaagagg |
37633324 |
T |
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| Q |
101 |
aatcatattataattaaaatgagagcgtattttggttagaagaacatctactaaggagaaaagagaagagaattggatattgtaaattgaatggttaagt |
200 |
Q |
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| T |
37633325 |
aatcatattataattaaaatgagagcgtattttgattagaagaacatctactaaggagaaaagagaagagaattggatattgtaaattgaatggttaagt |
37633424 |
T |
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| Q |
201 |
taatggaacatattctacataa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37633425 |
taatggaacatattctacataa |
37633446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 37638697 - 37638780
Alignment:
| Q |
102 |
atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt |
181 |
Q |
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| T |
37638697 |
atcacattatgattaaaatgagagactattttggttagaagaacatctacgtactgaggagaaaagagaagagaattggatatt |
37638780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 37635783 - 37635866
Alignment:
| Q |
102 |
atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt |
181 |
Q |
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| T |
37635783 |
atcacattatgattaaattgagagactattttggttagaagaacatctacgtactgaggagaaaagagaagagaattggatatt |
37635866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 37644071 - 37644154
Alignment:
| Q |
102 |
atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt |
181 |
Q |
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| T |
37644071 |
atcacattatgattaaaatgagagactactttggttagaagaacatctacgtactgaggagaaaagagaagagaattggatatt |
37644154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 37646984 - 37647067
Alignment:
| Q |
102 |
atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt |
181 |
Q |
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| T |
37646984 |
atcacattatgattaaaatgagagactactttggttagaagaacatctacgtactgaggagaaaatagaagagaattggatatt |
37647067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 181
Target Start/End: Original strand, 37649897 - 37649980
Alignment:
| Q |
102 |
atcatattataattaaaatgagagcgtattttggttagaagaacatc----tactaaggagaaaagagaagagaattggatatt |
181 |
Q |
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|||| ||||| ||||||||||||| || |||||||||||||||||| |||| |||||||| ||||||||||||||||||| |
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| T |
37649897 |
atcacattatgattaaaatgagagactactttggttagaagaacatctacgtactgaggagaaatgagaagagaattggatatt |
37649980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 37636283 - 37636320
Alignment:
| Q |
181 |
tgtaaattgaatggttaagttaatggaacatattctac |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
37636283 |
tgtaaattcaatggttaagttaatggaacatattctac |
37636320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 37639197 - 37639234
Alignment:
| Q |
181 |
tgtaaattgaatggttaagttaatggaacatattctac |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
37639197 |
tgtaaattcaatggttaagttaatggaacatattctac |
37639234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 37644571 - 37644608
Alignment:
| Q |
181 |
tgtaaattgaatggttaagttaatggaacatattctac |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
37644571 |
tgtaaattcaatggttaagttaatggaacatattctac |
37644608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 37647484 - 37647521
Alignment:
| Q |
181 |
tgtaaattgaatggttaagttaatggaacatattctac |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
37647484 |
tgtaaattcaatggttaagttaatggaacatattctac |
37647521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 37650396 - 37650433
Alignment:
| Q |
181 |
tgtaaattgaatggttaagttaatggaacatattctac |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||| |
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| T |
37650396 |
tgtaaattcaatggttaagttaatggaacatattctac |
37650433 |
T |
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