View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_high_9 (Length: 271)
Name: NF21277_high_9
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 27429390 - 27429644
Alignment:
| Q |
1 |
acattaatacagacacctttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggt |
100 |
Q |
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| T |
27429390 |
acattaatacagacacccttgttatttcatgcaatgaaacactgaacctatacacttataaccttatctcatacagtgactcatgttgttctcatatggt |
27429489 |
T |
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| Q |
101 |
acaagtataatactacataatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagatattatttttccatcacaaac |
200 |
Q |
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| T |
27429490 |
acaagtataataccacataatcactctgcacgttgcttttattattcgcaactacactttgcttttatcttaaagaagacattatttttccatcacaaac |
27429589 |
T |
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| Q |
201 |
acaagcaaaatcactatatatgacacattttttgttattgataaattatgtcaca |
255 |
Q |
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| T |
27429590 |
acaagcaaaatcactatatatgacacattttttgttattgataaattatgtcaca |
27429644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 177
Target Start/End: Original strand, 27446785 - 27446841
Alignment:
| Q |
123 |
actctgcacgttgcttttattattcgcaac--tacactttgcttttatcttaaagaa |
177 |
Q |
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| T |
27446785 |
actctgcacgttgcttttattattcacaactatacacattgcttttattttaaagaa |
27446841 |
T |
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