View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21277_low_15 (Length: 240)

Name: NF21277_low_15
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21277_low_15
NF21277_low_15
[»] chr6 (2 HSPs)
chr6 (20-120)||(4033739-4033839)
chr6 (207-240)||(4033645-4033678)
[»] chr3 (1 HSPs)
chr3 (30-113)||(40286811-40286894)
[»] chr5 (2 HSPs)
chr5 (79-113)||(3260152-3260186)
chr5 (74-110)||(36714230-36714266)
[»] chr4 (3 HSPs)
chr4 (73-114)||(20286955-20286996)
chr4 (59-112)||(35345818-35345871)
chr4 (79-111)||(53496965-53496997)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 4033839 - 4033739
Alignment:
Q  20 acttaaaattttggagtgtgcttctctttaaggtcttaagtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaatatagga 119  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  4033839 acttgaaactttggagtgtgcttctctttaaggtcttaagtttgactctctcatatgtcaatttggttgaactaatttaacttcttaaaaaaatatagga 4033740  T
Q  120 g 120  Q
    |    
T  4033739 g 4033739  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 4033678 - 4033645
Alignment:
Q  207 caattcattttcccttatctagaatctgaagttg 240  Q
    ||||||||||||||||||||||||||||||||||    
T  4033678 caattcattttcccttatctagaatctgaagttg 4033645  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 40286894 - 40286811
Alignment:
Q  30 ttggagtgtgcttctctttaaggtcttaagtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaat 113  Q
    |||||||||| | ||| | ||| ||||| |||| | ||||||  |||||||||||| || ||||||||| ||||||||||||||    
T  40286894 ttggagtgtggtcctcctcaagatcttatgtttcattctctccaatgttaatttggatggactaatttagcttcttaaaaaaat 40286811  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 113
Target Start/End: Complemental strand, 3260186 - 3260152
Alignment:
Q  79 aatttggttgaactaatttaacttcttaaaaaaat 113  Q
    |||||| ||||||||||||||||||||||||||||    
T  3260186 aatttgattgaactaatttaacttcttaaaaaaat 3260152  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 36714266 - 36714230
Alignment:
Q  74 atgttaatttggttgaactaatttaacttcttaaaaa 110  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  36714266 atgttaatttggctgaactagtttaacttcttaaaaa 36714230  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 20286955 - 20286996
Alignment:
Q  73 tatgttaatttggttgaactaatttaacttcttaaaaaaata 114  Q
    ||||||||||||| |||  |||||||||||||||||||||||    
T  20286955 tatgttaatttggatgagttaatttaacttcttaaaaaaata 20286996  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 35345818 - 35345871
Alignment:
Q  59 gtttgactctctcatatgttaatttggttgaactaatttaacttcttaaaaaaa 112  Q
    |||||||||||||  |||| ||||||| || ||||||||| |||||||||||||    
T  35345818 gtttgactctctccgatgtcaatttggatggactaatttatcttcttaaaaaaa 35345871  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Original strand, 53496965 - 53496997
Alignment:
Q  79 aatttggttgaactaatttaacttcttaaaaaa 111  Q
    |||||||||| ||||||||||||||||||||||    
T  53496965 aatttggttggactaatttaacttcttaaaaaa 53496997  T

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