View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_low_2 (Length: 449)
Name: NF21277_low_2
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 55025120 - 55025546
Alignment:
| Q |
8 |
cagagaaccagaaaagtacattttctcatcgagcgaagttaaaccccattctgatatcattctactcagttgtagattagactttgatcaaggaataatg |
107 |
Q |
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| T |
55025120 |
cagagaaccagaaaagtacattttctcatcgagcgaagttaaaccccattctgatatcattctactcagttgtagattagactttgatcaaggaataatg |
55025219 |
T |
|
| Q |
108 |
ttcaatcatcgtttcttaatatcatgcttttgttgatgcagtggatttgtataatgcaaaacatcctgttgtcctgtgtactgatgactctggtgtgttc |
207 |
Q |
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| T |
55025220 |
ttcaatcatcgtttcttaatatcatgcttttgttgatgcagtggatttgtataatgcaaaacatcatgtagtcctgtgtactgatgactctggtgtgttc |
55025319 |
T |
|
| Q |
208 |
tccaccagtctctccaacgaatacaaaattgctgcttcttcatttggtaagtttgacttcactcttgcattcaatagactttaaactaatgtttaataaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
55025320 |
tccaccagtctctccaacgaatacaaaattgctgcttcttcatttggtaagtttgacttcactcttgcattcaatagactttaaactaatgtataataaa |
55025419 |
T |
|
| Q |
308 |
ctttgctgactacttgttgattgtgatatataggccttggaaggaaggagatgtttgagctatcaaagaatgctgttgaatttatatttgcggataatat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
55025420 |
ctttgctgactacttgttgattgtgatatataggccttggaaggaaggagatgtttgagctatcaaagaatgctgttgaattcatatttgcagataatat |
55025519 |
T |
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| Q |
408 |
ggtaaaggaggatttaagaaatatttt |
434 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55025520 |
ggtaaaggaggatttaagaaatatttt |
55025546 |
T |
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