View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_low_21 (Length: 228)
Name: NF21277_low_21
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_low_21 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42187138 - 42186911
Alignment:
| Q |
1 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatttt |
100 |
Q |
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| T |
42187138 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatttt |
42187039 |
T |
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| Q |
101 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacctta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42187038 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcaccttt |
42186939 |
T |
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| Q |
201 |
acaatttagaaattaaccaattaggatt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42186938 |
acaatttagaaattaaccaattaggatt |
42186911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 42204189 - 42203962
Alignment:
| Q |
1 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagtaaataaatttcttaccttagtcccgttcatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42204189 |
gaataaactataatgataagcttcaagatcaataagatgttgttgggattctgaaatattttgaagcaaataaatttcttaccttagtcccgttcatttt |
42204090 |
T |
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| Q |
101 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatgagcattcacatagttcacctta |
200 |
Q |
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| T |
42204089 |
caattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccgatcagtgatgatgtggcgtgagcatttacatagttcaccttt |
42203990 |
T |
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| Q |
201 |
acaatttagaaattaaccaattaggatt |
228 |
Q |
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||||||| ||| || ||||||||||| |
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| T |
42203989 |
acaatttgaaaagtagacaattaggatt |
42203962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 42196853 - 42196705
Alignment:
| Q |
80 |
taccttagtcccgttcattttcaattccgatgtgtccttaaaaacttgtttgattgcattaacctcagctaagtcaccggctagtgtggatgtggcatga |
179 |
Q |
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||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||||||||||| ||||||||| || ||||| |||| ||||||||||||||| |
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| T |
42196853 |
taccttagttccgttcattttcaattctgatgtatccttgaaaacctgtttgattgcataaacctcagccaaatcaccagctaccgtggatgtggcatga |
42196754 |
T |
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| Q |
180 |
gcattcacatagttcaccttaacaatttagaaattaaccaattaggatt |
228 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
42196753 |
gcattcacatagttcacctttacaatttagaaattaaccaattaggatt |
42196705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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