View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_low_3 (Length: 432)
Name: NF21277_low_3
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Original strand, 44670776 - 44671150
Alignment:
| Q |
19 |
gataatgcattgtatatgcttttgttttactcttatctcatgtatgcattcttgaaaacatttgtgctaagtgccaatttgcgattagcacaaacaaatt |
118 |
Q |
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| T |
44670776 |
gataatgcattgtatatgcttttgttttactcttatctcatgtatgcattcttgaaaacatttgtgctaagtgccaatttgcgattagcacaaacaaatt |
44670875 |
T |
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| Q |
119 |
gattttaattactcaaacacaacctcattcgttaggcagaccaagatttcaaggtacaaacttttaataatactttcttcacaattgttttgtttgaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44670876 |
gattttaattactcaaacacaacctcattcgttaggcagaccaagatttcaaggtacaaacttttaataatactttcttcacaattgttttgtttgaaat |
44670975 |
T |
|
| Q |
219 |
atatcttctgctaagatcatgaatctaaatcccaagaatgaccagagttcatcaataagaaagtagggggaggaaatgcaaggtgcataataaaaccatc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44670976 |
atatcttctgctaagatcatgaatctaaatcccaagaatgaccagagttcatcaagaagaaagtagggggaggaaatgcaaggtgcataataaaaccatg |
44671075 |
T |
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| Q |
319 |
acgttccgtagtagtttatttcacaacctaaaagggattgattaatacaatttaatttaatcctcctccctaatatg |
395 |
Q |
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||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44671076 |
acgttccgtagtagtttattt--caacctaaaagggatagattaatacaatttaatttaatcctcctccctaatatg |
44671150 |
T |
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