View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21277_low_5 (Length: 401)
Name: NF21277_low_5
Description: NF21277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21277_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 41 - 386
Target Start/End: Complemental strand, 37445781 - 37445436
Alignment:
| Q |
41 |
tcatttgaggatatgtttataatttcgatatagacagttactatagactatagtgacatggtctcacataatacacatttagagaccaaaatgattattt |
140 |
Q |
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| T |
37445781 |
tcatttgaggatatgtttataatttcgatatagacagttactatagactatagtgacatggtctcacataatacacatttagagaccaaaatgattattt |
37445682 |
T |
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| Q |
141 |
acgatttcttaatttgtatgaaataaacaagtgtgggacgaagagagtatgtgtttatacatggttgacgaagatcttacttttgagaatttactannnn |
240 |
Q |
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| T |
37445681 |
acgctttcttaatttgtatgaaataaacaagtgtgggacgaagagagtatgtgtttatacatggttgacgaagatcttacttttgagaatttactatttt |
37445582 |
T |
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| Q |
241 |
nnnnctatgtatttgtagaaatccttgaacctgaagtgaattttacaagcctttctataatctctcctggtagagatgacattgttcttcccattcctga |
340 |
Q |
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| T |
37445581 |
ttttctatgtatttgtagaaatccttgaacctgaagtgaattttacaagcctttctataatctctcctggtagagatgacattgttcttcccattcctga |
37445482 |
T |
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| Q |
341 |
agatggaaaaccacagggattgtggtttactcttaaagaaggtagt |
386 |
Q |
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| T |
37445481 |
agatggaaaaccacagggattgtggtttactcttaaagaaggtagt |
37445436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 37449464 - 37449504
Alignment:
| Q |
148 |
cttaatttgtatgaaataaacaagtgtgggacgaagagagt |
188 |
Q |
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| T |
37449464 |
cttaatttgtatgaaataaacaagtgtgggacgaagagagt |
37449504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 9215198 - 9215137
Alignment:
| Q |
324 |
gttcttcccattcctgaagatggaaaaccacagggattgtggtttactcttaaagaaggtag |
385 |
Q |
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| T |
9215198 |
gttcttccaataccagaagatggaaatccaaagggtttgtggtttactttgaaagaaggtag |
9215137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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