View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21278_high_5 (Length: 274)

Name: NF21278_high_5
Description: NF21278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21278_high_5
NF21278_high_5
[»] chr6 (20 HSPs)
chr6 (19-143)||(31069594-31069718)
chr6 (19-125)||(22974603-22974709)
chr6 (19-125)||(23813692-23813798)
chr6 (19-123)||(5362925-5363029)
chr6 (19-143)||(1017790-1017915)
chr6 (19-139)||(2830697-2830817)
chr6 (19-143)||(10887070-10887195)
chr6 (31-143)||(31568163-31568275)
chr6 (21-143)||(17596385-17596507)
chr6 (19-143)||(18332700-18332825)
chr6 (19-143)||(6016897-6017022)
chr6 (19-143)||(31169775-31169900)
chr6 (29-139)||(27819643-27819754)
chr6 (23-141)||(31790930-31791048)
chr6 (19-80)||(3850593-3850654)
chr6 (19-127)||(8977494-8977603)
chr6 (95-143)||(3853061-3853109)
chr6 (22-128)||(30623370-30623477)
chr6 (69-143)||(31503834-31503908)
chr6 (23-143)||(30591175-30591296)
[»] chr8 (40 HSPs)
chr8 (19-143)||(13327953-13328077)
chr8 (19-143)||(18567428-18567552)
chr8 (19-129)||(9743903-9744013)
chr8 (19-143)||(9801710-9801834)
chr8 (19-141)||(40210835-40210957)
chr8 (19-143)||(10129145-10129269)
chr8 (19-143)||(7140471-7140595)
chr8 (19-143)||(39701815-39701939)
chr8 (18-143)||(19343848-19343974)
chr8 (19-130)||(8140609-8140720)
chr8 (19-143)||(35678287-35678411)
chr8 (25-143)||(1203649-1203767)
chr8 (19-143)||(14816138-14816262)
chr8 (19-143)||(14829478-14829602)
chr8 (19-143)||(26682109-26682234)
chr8 (19-143)||(8284580-8284706)
chr8 (19-143)||(4084555-4084679)
chr8 (19-143)||(4080406-4080530)
chr8 (19-143)||(4102862-4102986)
chr8 (19-143)||(31812154-31812279)
chr8 (19-143)||(39024869-39024993)
chr8 (66-139)||(45519578-45519651)
chr8 (73-127)||(31451420-31451474)
chr8 (19-143)||(26834602-26834727)
chr8 (19-128)||(44091360-44091469)
chr8 (66-143)||(37389451-37389528)
chr8 (19-124)||(38527862-38527971)
chr8 (19-85)||(39703495-39703561)
chr8 (19-85)||(45516330-45516395)
chr8 (19-143)||(3306067-3306191)
chr8 (20-143)||(20514675-20514799)
chr8 (19-144)||(1844571-1844698)
chr8 (37-143)||(7393257-7393363)
chr8 (19-138)||(10974575-10974691)
chr8 (105-143)||(6818145-6818183)
chr8 (69-143)||(9580121-9580195)
chr8 (89-143)||(36967082-36967136)
chr8 (89-143)||(45518064-45518118)
chr8 (33-130)||(35583423-35583519)
chr8 (19-108)||(34249718-34249809)
[»] chr5 (25 HSPs)
chr5 (30-143)||(31365962-31366075)
chr5 (169-274)||(32291744-32291849)
chr5 (19-143)||(2795565-2795689)
chr5 (19-143)||(12642005-12642129)
chr5 (19-143)||(4047454-4047578)
chr5 (19-130)||(15190914-15191026)
chr5 (19-130)||(30328352-30328463)
chr5 (19-130)||(9184249-9184360)
chr5 (51-143)||(14466506-14466598)
chr5 (19-143)||(34578053-34578177)
chr5 (19-143)||(41350244-41350368)
chr5 (19-143)||(11376001-11376126)
chr5 (31-142)||(28629932-28630043)
chr5 (19-143)||(11636773-11636897)
chr5 (19-143)||(8103592-8103716)
chr5 (19-130)||(24329660-24329772)
chr5 (19-141)||(16174636-16174758)
chr5 (89-143)||(30893741-30893795)
chr5 (19-82)||(5958196-5958260)
chr5 (19-129)||(18150454-18150566)
chr5 (30-139)||(15837327-15837437)
chr5 (105-143)||(23995428-23995466)
chr5 (25-141)||(31567505-31567622)
chr5 (70-143)||(32019996-32020069)
chr5 (36-143)||(15240962-15241070)
[»] chr7 (33 HSPs)
chr7 (19-143)||(9332003-9332127)
chr7 (19-143)||(36548472-36548596)
chr7 (22-143)||(18102242-18102364)
chr7 (19-121)||(47120228-47120330)
chr7 (19-143)||(19889382-19889506)
chr7 (19-143)||(39757122-39757246)
chr7 (19-143)||(5909294-5909418)
chr7 (19-141)||(384444-384566)
chr7 (19-143)||(3561890-3562014)
chr7 (19-143)||(12085943-12086067)
chr7 (49-139)||(8170593-8170683)
chr7 (19-143)||(23982767-23982892)
chr7 (19-143)||(7170044-7170168)
chr7 (77-143)||(22334033-22334099)
chr7 (19-143)||(8091324-8091449)
chr7 (19-143)||(25709411-25709536)
chr7 (19-143)||(47457473-47457598)
chr7 (19-143)||(24462967-24463091)
chr7 (66-143)||(41331468-41331545)
chr7 (32-128)||(47707911-47708008)
chr7 (77-143)||(8594998-8595063)
chr7 (19-81)||(24250355-24250417)
chr7 (19-130)||(39869164-39869274)
chr7 (25-143)||(7899498-7899617)
chr7 (31-97)||(16800543-16800609)
chr7 (19-108)||(19868155-19868245)
chr7 (81-143)||(24250602-24250664)
chr7 (71-139)||(26300665-26300733)
chr7 (24-82)||(24699181-24699240)
chr7 (100-143)||(33072104-33072147)
chr7 (27-143)||(3530126-3530242)
chr7 (24-139)||(12624683-12624798)
chr7 (19-130)||(12650862-12650973)
[»] chr4 (34 HSPs)
chr4 (19-143)||(29190828-29190952)
chr4 (19-143)||(53961364-53961488)
chr4 (19-143)||(4329636-4329760)
chr4 (19-143)||(7349730-7349854)
chr4 (19-143)||(41415569-41415693)
chr4 (19-143)||(35999959-36000076)
chr4 (19-141)||(48910816-48910938)
chr4 (30-143)||(23553623-23553736)
chr4 (19-143)||(10389280-10389404)
chr4 (47-143)||(23051394-23051490)
chr4 (19-143)||(16667396-16667521)
chr4 (19-120)||(10813529-10813631)
chr4 (19-143)||(47326904-47327029)
chr4 (19-143)||(47341700-47341825)
chr4 (19-143)||(54495649-54495774)
chr4 (19-78)||(49228398-49228457)
chr4 (77-143)||(49228754-49228820)
chr4 (19-143)||(8736823-8736947)
chr4 (19-143)||(27362432-27362557)
chr4 (30-142)||(36971326-36971439)
chr4 (19-86)||(49650252-49650319)
chr4 (31-143)||(2096924-2097037)
chr4 (24-120)||(39539510-39539607)
chr4 (19-143)||(49181113-49181238)
chr4 (16-62)||(16069301-16069347)
chr4 (22-143)||(19468238-19468360)
chr4 (23-143)||(23438201-23438321)
chr4 (19-142)||(25843332-25843459)
chr4 (25-130)||(1378066-1378171)
chr4 (22-143)||(19450912-19451034)
chr4 (30-143)||(41970436-41970548)
chr4 (22-143)||(52391342-52391464)
chr4 (115-143)||(9971672-9971700)
chr4 (19-130)||(37784885-37784997)
[»] chr3 (31 HSPs)
chr3 (19-143)||(16875037-16875161)
chr3 (19-143)||(11610956-11611080)
chr3 (19-130)||(50364232-50364343)
chr3 (19-117)||(54621256-54621354)
chr3 (19-143)||(20938098-20938223)
chr3 (19-143)||(32553408-32553532)
chr3 (23-143)||(3863375-3863495)
chr3 (24-130)||(24978693-24978799)
chr3 (19-143)||(13495335-13495460)
chr3 (19-143)||(38389488-38389613)
chr3 (19-87)||(51339252-51339320)
chr3 (24-143)||(29686367-29686486)
chr3 (19-130)||(38786349-38786459)
chr3 (19-143)||(40497089-40497213)
chr3 (19-143)||(46492355-46492480)
chr3 (24-131)||(1569214-1569322)
chr3 (19-143)||(36426421-36426548)
chr3 (64-143)||(49396467-49396546)
chr3 (66-143)||(23523035-23523112)
chr3 (20-140)||(23638064-23638185)
chr3 (22-141)||(23803060-23803180)
chr3 (95-143)||(11611094-11611142)
chr3 (70-141)||(39364884-39364955)
chr3 (19-62)||(46845534-46845577)
chr3 (101-143)||(35414821-35414863)
chr3 (92-130)||(36812373-36812411)
chr3 (22-126)||(38785924-38786029)
chr3 (78-143)||(41151734-41151799)
chr3 (31-143)||(51618103-51618213)
chr3 (30-117)||(23320122-23320210)
chr3 (33-120)||(53794819-53794907)
[»] chr2 (29 HSPs)
chr2 (19-143)||(14377466-14377590)
chr2 (19-143)||(16126571-16126695)
chr2 (19-143)||(16919166-16919290)
chr2 (19-143)||(19228467-19228591)
chr2 (19-143)||(26229866-26229989)
chr2 (19-143)||(27665056-27665180)
chr2 (19-143)||(12016708-12016832)
chr2 (19-143)||(22705496-22705620)
chr2 (24-143)||(4821323-4821442)
chr2 (20-143)||(8770898-8771021)
chr2 (19-143)||(16123320-16123444)
chr2 (30-140)||(13351226-13351336)
chr2 (19-129)||(39904074-39904184)
chr2 (19-143)||(15411634-15411759)
chr2 (19-111)||(10690824-10690916)
chr2 (19-143)||(2060054-2060179)
chr2 (30-143)||(15231883-15231997)
chr2 (19-143)||(9747358-9747483)
chr2 (30-130)||(37471765-37471866)
chr2 (19-130)||(40562102-40562214)
chr2 (33-143)||(20566029-20566140)
chr2 (66-143)||(12919362-12919439)
chr2 (19-143)||(45062239-45062364)
chr2 (31-125)||(2051667-2051763)
chr2 (100-143)||(7757798-7757841)
chr2 (19-62)||(43388860-43388903)
chr2 (68-130)||(41492158-41492220)
chr2 (19-143)||(24729589-24729714)
chr2 (19-55)||(34214052-34214088)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-143)||(52791-52915)
[»] scaffold0017 (1 HSPs)
scaffold0017 (19-143)||(145719-145843)
[»] chr1 (32 HSPs)
chr1 (19-143)||(313791-313915)
chr1 (19-143)||(44918066-44918190)
chr1 (24-143)||(30288876-30288995)
chr1 (19-143)||(39150339-39150463)
chr1 (20-143)||(6569997-6570120)
chr1 (19-143)||(17919495-17919619)
chr1 (19-147)||(8062246-8062374)
chr1 (19-143)||(39930813-39930937)
chr1 (37-123)||(32716195-32716281)
chr1 (19-143)||(30171920-30172045)
chr1 (19-143)||(30187461-30187586)
chr1 (25-130)||(52833497-52833602)
chr1 (19-143)||(6754513-6754637)
chr1 (19-143)||(30363007-30363132)
chr1 (19-140)||(36490820-36490942)
chr1 (19-143)||(41624871-41624995)
chr1 (19-130)||(21854142-21854254)
chr1 (70-143)||(12947566-12947639)
chr1 (70-130)||(10896446-10896506)
chr1 (66-143)||(3096298-3096375)
chr1 (69-134)||(21391920-21391985)
chr1 (19-143)||(34802009-34802133)
chr1 (73-130)||(44007555-44007612)
chr1 (19-130)||(31100958-31101069)
chr1 (30-83)||(43671742-43671795)
chr1 (69-130)||(52337858-52337919)
chr1 (19-141)||(5057043-5057166)
chr1 (25-143)||(9516628-9516747)
chr1 (89-143)||(23576426-23576480)
chr1 (19-143)||(23591739-23591864)
chr1 (22-62)||(19277832-19277872)
chr1 (19-55)||(51382413-51382449)
[»] scaffold0018 (1 HSPs)
scaffold0018 (18-143)||(182084-182208)
[»] scaffold0011 (1 HSPs)
scaffold0011 (19-143)||(13127-13251)
[»] scaffold0155 (1 HSPs)
scaffold0155 (19-143)||(3425-3550)
[»] scaffold0727 (1 HSPs)
scaffold0727 (30-143)||(5744-5857)
[»] scaffold0009 (1 HSPs)
scaffold0009 (19-143)||(43504-43630)
[»] scaffold0111 (1 HSPs)
scaffold0111 (19-143)||(37126-37251)
[»] scaffold0618 (1 HSPs)
scaffold0618 (19-128)||(8441-8550)
[»] scaffold0192 (1 HSPs)
scaffold0192 (89-143)||(13575-13629)
[»] scaffold0036 (1 HSPs)
scaffold0036 (19-143)||(94030-94155)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 31069718 - 31069594
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  31069718 aaaagtagtaagtttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagttccaagtcaaagttactaatttaaac 31069619  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||||||||| ||||||||||||    
T  31069618 ttcttaacatgtgtaaatttgcaca 31069594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 125
Target Start/End: Complemental strand, 22974709 - 22974603
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  22974709 aaaagtagtaacttttcattgaaaatcaacaattattgattaaaagttacatatttaatataaaaaacacaagttccaagttaaagttactattttaaac 22974610  T
Q  119 ttcttaa 125  Q
    |||||||    
T  22974609 ttcttaa 22974603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 23813692 - 23813798
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  23813692 aaaagtagtaacttttcattgaaaatcaacaattattgattaaaagttacatatttaatataaaaaacacaagttccaagttaaagttactattttaaac 23813791  T
Q  119 ttcttaa 125  Q
    |||||||    
T  23813792 ttcttaa 23813798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 5363029 - 5362925
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  5363029 aaaagtagtaacttttcattgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaac 5362930  T
Q  119 ttctt 123  Q
    |||||    
T  5362929 ttctt 5362925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 1017915 - 1017790
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgtt-acatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| ||||  ||||||||||||||||||| ||||||  || |||||||||||||||||  || || ||||||||||||||||||| ||||||    
T  1017915 aaaagtagtaacttttcgttgaaaaccaacaattatttattaaaaatttacatatttaatataaaatgcacaactttcaagtcaaagttactactttaaa 1017816  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||| ||||||| ||||    
T  1017815 cttcttaacatgtgtaaatttacaca 1017790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 139
Target Start/End: Complemental strand, 2830817 - 2830697
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| || ||  || | ||||||| || |||||||    
T  2830817 aaaagtagtaacttttcattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaaattctaaattaaagttattattttaaac 2830718  T
Q  119 ttcttaacatgtataaatttg 139  Q
    ||||||||||||  |||||||    
T  2830717 ttcttaacatgtgcaaatttg 2830697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 10887070 - 10887195
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||  | |||||||||||||||||| ||| ||||| ||| ||||| |||| | ||||||    
T  10887070 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctacatatttaatataaaatacacaagttccaaatcaaaattaccactttaaa 10887169  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  10887170 cttcttaacatgtgcaaatttgcaca 10887195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 31568163 - 31568275
Alignment:
Q  31 tttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    ||||||||||||| |||||||| ||  | ||| | |||||||||| ||||||||||| ||||||||| |||||||||||| ||||||||| |||||||||    
T  31568163 tttttattgaaaatcaacaatttttattcaaaagctacatatttattataaaaaacacaagtttcaaatcaaagttactactttaaactttttaacatgt 31568262  T
Q  131 ataaatttgcaca 143  Q
      |||||||||||    
T  31568263 gcaaatttgcaca 31568275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 17596385 - 17596507
Alignment:
Q  21 aagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaact 119  Q
    ||||||||| |||||||||||| |||||||||| | ||||||  | |||||| |||||||||||  || ||||| ||| |||||||||||| ||||||||    
T  17596385 aagtagtaactttttattgaaa-ccaacaattaattattaaaaatctacatagttaatataaaatgcacaagttccaaatcaaagttactactttaaact 17596483  T
Q  120 tcttaacatgtataaatttgcaca 143  Q
    ||||| |||||| |||||||||||    
T  17596484 tcttatcatgtacaaatttgcaca 17596507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 18332825 - 18332700
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||  | || ||||||||||| |||  |||||||| ||||||||| |||  | ||||||    
T  18332825 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctatatatttaatatgaaatgcataagttccaagtcaaaattatcactttaaa 18332726  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  18332725 cttcttaacatgtgaaaatttgcaca 18332700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 6016897 - 6017022
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| |||||||| ||||| |||||  |||||  |||| ||||||||||| |||  || ||||| |||||||||||||| | ||||||    
T  6016897 aaaagtagtaacttttcattgaaaaacaacacttattttttaaaaagttatatatttaatatgaaatgcacaagttccaagtcaaagttaccactttaaa 6016996  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||| |||||||||  |||||||||||    
T  6016997 ctttttaacatgtgcaaatttgcaca 6017022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 31169900 - 31169775
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||||||||  ||||||||||| ||||| | ||||||    ||||||||||||||||||  || ||||| |||||||||||||||| ||||||    
T  31169900 aaaaatagtaatttttctttgaaaaccaataattaattattaaaaacctacatatttaatataaaatgcacaagttccaagtcaaagttactactttaaa 31169801  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     || |||||||||  |||||| ||||    
T  31169800 tttgttaacatgtgcaaatttacaca 31169775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 27819754 - 27819643
Alignment:
Q  29 attttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaaca 127  Q
    |||||||||||||||||||||   ||| ||||||  |||||||||||| |||||||   |||||||| ||| ||||  ||| | ||||||||||||||||    
T  27819754 attttttattgaaaaccaacatcaatttattaaaaagttacatatttagtataaaatgaataagttttaagacaaaaatacaattttaaacttcttaaca 27819655  T
Q  128 tgtataaatttg 139  Q
    |||  |||||||    
T  27819654 tgtgcaaatttg 27819643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 31791048 - 31790930
Alignment:
Q  23 gtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttct 122  Q
    ||||||| ||||||||||||| ||  |||||||  | ||| ||| | ||||||||||| || |||||||||||||| |||| || | | |||||| ||||    
T  31791048 gtagtaactttttattgaaaaacactaattattattaaaacgtttcctatttaatatagaatacataagtttcaagacaaacttgccattttaaatttct 31790949  T
Q  123 taacatgtataaatttgca 141  Q
    ||| ||||  |||||||||    
T  31790948 taatatgtgcaaatttgca 31790930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 3850593 - 3850654
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatata 80  Q
    |||||||| || |||| |||||||| ||| ||||||| |||||| |||||||||||||||||    
T  3850593 aaaagtagcaacttttcattgaaaatcaataattattcattaaaagttacatatttaatata 3850654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 127
Target Start/End: Complemental strand, 8977603 - 8977494
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||| ||  ||| |||||||| ||||||| ||| ||| ||| ||||||||||||||||||||  || ||||| |||  |||| |||||| ||| ||    
T  8977603 aaaagtagcaacctttaattgaaaaacaacaatcatttattgaaaagttacatatttaatataaaatgcacaagttacaatacaaatttactattttgaa 8977504  T
Q  118 cttcttaaca 127  Q
    ||||||||||    
T  8977503 cttcttaaca 8977494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 3853061 - 3853109
Alignment:
Q  95 caagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  3853061 caagtcaaagttactactttaaatttcttaacatgtgcaaatttgcaca 3853109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 30623370 - 30623477
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||| ||||| ||||||| ||||||||||| ||| ||| |||  ||||||||||| |||   | |||||||||  |||| || ||| |||||||||    
T  30623370 agtagtaactttttcttgaaaaacaacaattatttattcaaaagttttatatttaatatcaaatgtacaagtttcaatacaaaatttctattttaaactt 30623469  T
Q  121 cttaacat 128  Q
    ||||||||    
T  30623470 cttaacat 30623477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Original strand, 31503834 - 31503908
Alignment:
Q  69 atatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||| ||| ||||| |||   ||| |||||| |||||| ||||||||||||  |||||||||||    
T  31503834 atatttaatataaaatacacaagttccaatataaacttactactttaaatttcttaacatgtgcaaatttgcaca 31503908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 30591296 - 30591175
Alignment:
Q  23 gtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttc 121  Q
    ||||||| |||||||||||||   ||||||||| || |||  |||| | |||||||| |||| | | ||||| |||  |||| |||| | || |||||||    
T  30591296 gtagtaagtttttattgaaaaaatacaattatttatcaaaaagttatacatttaatacaaaatatacaagttacaatgcaaaattaccatttaaaacttc 30591197  T
Q  122 ttaacatgtataaatttgcaca 143  Q
    ||||||||| ||||||||||||    
T  30591196 ttaacatgtgtaaatttgcaca 30591175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 13328077 - 13327953
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13328077 aaaagtagtaacttttcattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagtttcaagtcaaagttactaatttaaac 13327978  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  13327977 ttcttaacatgtgcaaatttgcaca 13327953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 18567552 - 18567428
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  18567552 aaaagtggtaacttttcattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacatgttccaagtcaaagttactaatttaaac 18567453  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  18567452 ttcttaacatgtgcaaatttgcaca 18567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 9743903 - 9744013
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  9743903 aaaagtagtaattttttattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacataagttccaagtcaaagttactactttaaac 9744002  T
Q  119 ttcttaacatg 129  Q
    |||||| ||||    
T  9744003 ttcttatcatg 9744013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 9801710 - 9801834
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| |||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  9801710 aaaagtagtaacttttcattgaaaatcaacaattattgattaaaagttatatatttaatataacaaacataagtttcaagtcaaagttactactttaaac 9801809  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  9801810 ttcttaacatgtgcaaatttgcaca 9801834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 40210957 - 40210835
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||||||||    
T  40210957 aaaagtattaacttttcattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaaattcaaagtcaaagttactaatttaaac 40210858  T
Q  119 ttcttaacatgtataaatttgca 141  Q
     |||||||||||  |||||||||    
T  40210857 gtcttaacatgtgcaaatttgca 40210835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 10129145 - 10129269
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||| |||||| |||||||    
T  10129145 aaaattagtaatttttcattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaaattactactttaaac 10129244  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  10129245 ttcttaacatgtgcaaatttgcaca 10129269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 7140595 - 7140471
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||||||||||||| ||||| ||||| ||| |||||| |||||||    
T  7140595 aaaagtagtaactttttattgaaaaccaacaattattgattaaaaactacatatttaatataaaaaacacaagttccaagttaaaattactactttaaac 7140496  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||| ||||  |||||||||||    
T  7140495 ttcttaatatgtgcaaatttgcaca 7140471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 39701939 - 39701815
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| ||||  ||||||||||||||||| | |||||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  39701939 aaaagtagtaacttttcgttgaaaaccaacaattactaattaaaagttacatatttaatataaaaaacacaaatttcaagtcaaagttactactttaaac 39701840  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    || |||||||||  |||||||||||    
T  39701839 ttgttaacatgtgcaaatttgcaca 39701815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 19343974 - 19343848
Alignment:
Q  18 caaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaata-taaaaaacataagtttcaagtcaaagttactaatttaa 116  Q
    |||||||||||| |||| |||||||||||||||||||||| |||| ||||||||||||||| ||||||| | ||||||||||||||| |||||| |||||    
T  19343974 caaaagtagtaacttttcattgaaaaccaacaattattgagtaaaagttacatatttaatattaaaaaatacaagtttcaagtcaaaattactactttaa 19343875  T
Q  117 acttcttaacatgtataaatttgcaca 143  Q
    || | |||||||||  |||||||||||    
T  19343874 acgtgttaacatgtgcaaatttgcaca 19343848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 8140609 - 8140720
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||| |||||| |||||||||||||||||||| |||||| | ||||||||||||||||||||||||| ||| |||||||| ||| || ||||| |    
T  8140609 aaaagtagtgatttttcattgaaaaccaacaattatttattaaaagctacatatttaatataaaaaacataaattttaagtcaaaattattactttaatc 8140708  T
Q  119 ttcttaacatgt 130  Q
    ||||||||||||    
T  8140709 ttcttaacatgt 8140720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 35678411 - 35678287
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgtt-acatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| |||||||||||||||||| | ||||||  || |||||||||||||||| | || |||||||||||||||||||||| ||||||    
T  35678411 aaaagtagtaacttttcattgaaaaccaacaattaattattaaaaatttacatatttaatataaata-cacaagtttcaagtcaaagttactactttaaa 35678313  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  35678312 cttcttatcatgtgcaaatttgcaca 35678287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 1203649 - 1203767
Alignment:
Q  25 agtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctta 124  Q
    ||||| |||| ||||||||| || ||||||| ||||| ||||||||||||||||||||||||| ||||||  | ||||| |||||| |||||||||||||    
T  1203649 agtaacttttcattgaaaacaaataattattaattaactgttacatatttaatataaaaaacacaagtttttaatcaaaattactactttaaacttctta 1203748  T
Q  125 acatgtataaatttgcaca 143  Q
     |||||  |||||||||||    
T  1203749 tcatgtgcaaatttgcaca 1203767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 14816262 - 14816138
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| ||||||||||||||||||||||| | ||| |||  ||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||||    
T  14816262 aaaagtagtaactttttattgaaaaccaacaattaattattaaaaatttacatatttaatat-aaatacacaagttttaagtcaaagttactactttaaa 14816164  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||| |||||  |||||||||||    
T  14816163 tttcttatcatgtgcaaatttgcaca 14816138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 14829478 - 14829602
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| ||||||||||||||||||||||| | ||| |||  ||||||||||||||| ||| ||| |||||| ||||||||||||||| ||||||    
T  14829478 aaaagtagtaactttttattgaaaaccaacaattaattattaaaaatttacatatttaatat-aaatacacaagttttaagtcaaagttactactttaaa 14829576  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||| |||||  |||||||||||    
T  14829577 tttcttatcatgtgcaaatttgcaca 14829602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 26682109 - 26682234
Alignment:
Q  19 aaaagtagtaatttttt-attgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaa 116  Q
    ||||||||||||||||| ||||||||| |||||||||| ||||||  | |||| |||||||||||||  || ||||| |||||||||||||||| |||||    
T  26682109 aaaagtagtaatttttttattgaaaac-aacaattatttattaaaaagctacacatttaatataaaatgcacaagttccaagtcaaagttactactttaa 26682207  T
Q  117 acttcttaacatgtataaatttgcaca 143  Q
    | ||||||||||||  |||||||||||    
T  26682208 atttcttaacatgtgcaaatttgcaca 26682234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8284706 - 8284580
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttaca--tatttaatataaaaaacataagtttcaagtcaaagttactaatttaa 116  Q
    ||||||||||| |||||||| ||||  |||||||||| ||||||     ||  |||||||||||||| ||| ||||| |||||| ||||| |||||||||    
T  8284706 aaaagtagtaactttttattaaaaaagaacaattatttattaaaaagaccacctatttaatataaaatacacaagttccaagtcgaagttgctaatttaa 8284607  T
Q  117 acttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||| |||||||||||    
T  8284606 acttcttaacatgtacaaatttgcaca 8284580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 4084679 - 4084555
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgtt-acatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| ||||||||| |||||||| | | ||||  || ||||||||||||||||   ||||||||||||||||||||||||| ||||||    
T  4084679 aaaagtagtaacttttcattgaaaactaacaattaattactaaaaatttacatatttaatataaatg-cataagtttcaagtcaaagttactactttaaa 4084581  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||| |||||  |||||||||||    
T  4084580 tttcttatcatgtgcaaatttgcaca 4084555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 4080530 - 4080406
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgtt-acatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| ||||||||| |||||||| | | ||||  || ||||||||||||||||   || |||||||||||||||||||||| ||||||    
T  4080530 aaaagtagtaacttttcattgaaaactaacaattaattactaaaaatttacatatttaatataaatg-cacaagtttcaagtcaaagttactactttaaa 4080432  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||| |||||  |||||||||||    
T  4080431 tttcttatcatgtgcaaatttgcaca 4080406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 4102986 - 4102862
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgtt-acatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| ||||||||| |||||||| | | ||||  || ||||||||||||||||   || |||||||||||||||||||||| ||||||    
T  4102986 aaaagtagtaacttttcattgaaaactaacaattaattactaaaaatttacatatttaatataaatg-caaaagtttcaagtcaaagttactactttaaa 4102888  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||| |||||  |||||||||||    
T  4102887 tttcttatcatgtgcaaatttgcaca 4102862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 31812154 - 31812279
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||||||||||||  || | ||||| ||||||  | |||||||||||||| |||  || ||||| ||||||||| |||| | ||||||    
T  31812154 aaaagtagtaattttttattgaaaaataaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccattttaaa 31812253  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||| ||||  |||||||||||    
T  31812254 cttcttaatatgtgcaaatttgcaca 31812279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 39024993 - 39024869
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||| ||| |||||||||||| |||||||||| | ||||||  | |||||| |||||||||||  || || || |||||||||||||||| ||||||    
T  39024993 aaaagtaataactttttattgaaa-ccaacaattaattattaaaaatctacatagttaatataaaatgcacaaattccaagtcaaagttactactttaaa 39024895  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  39024894 cttcttatcatgtgcaaatttgcaca 39024869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 45519651 - 45519578
Alignment:
Q  66 tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttg 139  Q
    |||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||||||| |||||  |||||||    
T  45519651 tacatatttaatataaaaaacacaagttccaagttaaagttactactttaaacttcttatcatgtgcaaatttg 45519578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 31451420 - 31451474
Alignment:
Q  73 ttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaaca 127  Q
    ||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  31451420 ttaatataaaaaacacaagtttcaagttaaagttactactttaaacttcttaaca 31451474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 26834602 - 26834727
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||| ||| | |||||||||||||| |||  || ||||| ||||||||| |||| | ||||||    
T  26834602 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccattttaaa 26834701  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     ||||||| || |  |||||||||||    
T  26834702 tttcttaatatatgcaaatttgcaca 26834727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 44091360 - 44091469
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||    |||| |||||||||||||  || |||||  || |||||||||||| ||||||    
T  44091360 aaaagtattaattttttattgaaaac-aacaattatttattaaaaaactacaaatttaatataaaatgcacaagttctaaatcaaagttactactttaaa 44091458  T
Q  118 cttcttaacat 128  Q
     ||||||||||    
T  44091459 tttcttaacat 44091469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 37389451 - 37389528
Alignment:
Q  66 tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||||||   | |||||||||  |||||||| ||||||||| |||||||| ||||||||||| ||||    
T  37389451 tacatatttaatataaaatgaacaagtttcaaaacaaagttattaatttaaatttcttaacttgtataaatttacaca 37389528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 38527862 - 38527971
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt----aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaattt 114  Q
    ||||||| ||| |||| ||||||||||||| |||||| |||    ||| | |||||||||||||||||||||| || || ||| ||||| ||| || |||    
T  38527862 aaaagtaataacttttcattgaaaaccaacgattatttatttattaaaagctacatatttaatataaaaaacacaaattccaaatcaaaattattacttt 38527961  T
Q  115 aaacttctta 124  Q
    ||||||||||    
T  38527962 aaacttctta 38527971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 39703495 - 39703561
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaa 85  Q
    ||||||||||| ||||  || ||||||||||||||  | ||||| ||||||||||||||||||||||    
T  39703495 aaaagtagtaacttttcgttaaaaaccaacaattacgggttaaaagttacatatttaatataaaaaa 39703561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 45516330 - 45516395
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaa 85  Q
    ||||||||||| |||||||||||| | |||||||||| |||||| | ||||||||||||||| ||||    
T  45516330 aaaagtagtaactttttattgaaa-ctaacaattatttattaaaagctacatatttaatatataaaa 45516395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 3306191 - 3306067
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||||||||||| |||||||||||| |  |||  |||| |||||| ||| ||||     |||||||||  ||||||||||| ||||||    
T  3306191 aaaagtagtaagtttttattgaaa-ccaacaattatttaacaaaaagttatatatttgatacaaaatgttcaagtttcaatgcaaagttactattttaaa 3306093  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     ||||||||||||  |||||||||||    
T  3306092 tttcttaacatgtgcaaatttgcaca 3306067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 20514675 - 20514799
Alignment:
Q  20 aaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||||| ||||||||||  | |||||||| ||| ||| |||| |||||||||||||||   | ||||| |||| |||| |||| | ||||||     
T  20514675 aaagtagtaatttcttattgaaaaataccaattatttattaaaaagttatatatttaatataaaatgtacaagttccaagacaaacttaccattttaaat 20514774  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||||| |||  |||| ||||||    
T  20514775 ttcttaacctgtgcaaatatgcaca 20514799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 1844698 - 1844571
Alignment:
Q  19 aaaagtagtaattt-tttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaa 116  Q
    |||||||| ||||| |||||| ||||  |||||||||| ||||||  |||| ||||||||||||||| |||||| |||| |  |||| ||| || ||| |    
T  1844698 aaaagtagaaatttctttattaaaaagtaacaattatttattaaaaagttaaatatttaatataaaatacataaatttcgatacaaatttattattttga 1844599  T
Q  117 acttcttaacatgtataaatttgcacaa 144  Q
    | |||||||||||| |||| ||| ||||    
T  1844598 atttcttaacatgtgtaaacttgtacaa 1844571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 143
Target Start/End: Complemental strand, 7393363 - 7393257
Alignment:
Q  37 ttgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaa 135  Q
    ||||||| || |||||||| ||||||  |||| ||||||||||||||| ||| ||||| |||| |||| |||||| |||||| || |||||||||  |||    
T  7393363 ttgaaaaacaccaattatttattaaaaagttatatatttaatataaaatacacaagttacaagacaaa-ttactattttaaattttttaacatgtgcaaa 7393265  T
Q  136 tttgcaca 143  Q
    || |||||    
T  7393264 ttcgcaca 7393257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 10974691 - 10974575
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatg-ttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||  |||||||||||| ||| || |||| ||||||   |||||||||||||||||||   | |||    |||  |||||||||||||||||    
T  10974691 aaaagtagtaacattttattgaaaaacaataactatttattaaaaaattacatatttaatataaaatgtacaag----aagataaagttactaatttaaa 10974596  T
Q  118 cttcttaacatgtataaattt 138  Q
    ||| ||||||||| |||||||    
T  10974595 ctttttaacatgtgtaaattt 10974575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 6818145 - 6818183
Alignment:
Q  105 ttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  6818145 ttactattttaaacttcttaacatgtacaaatttgcaca 6818183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 9580195 - 9580121
Alignment:
Q  69 atatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| |||   | |||||||||  |||| || ||| ||||||||||||||||||| ||||||||||||    
T  9580195 atatttaatattaaatgtacaagtttcaatacaaaatttctattttaaacttcttaacatgtgtaaatttgcaca 9580121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 36967136 - 36967082
Alignment:
Q  89 aagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||  ||||||| ||| |||||||||||||||||||  |||||||||||    
T  36967136 aagtttcaatacaaagtttctattttaaacttcttaacatgtgcaaatttgcaca 36967082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 45518064 - 45518118
Alignment:
Q  89 aagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||| |||| |||||||||| |||||||||||||  ||||| |||||||||||    
T  45518064 aagttttaagttaaagttactagtttaaacttcttattatgtacaaatttgcaca 45518118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 130
Target Start/End: Original strand, 35583423 - 35583519
Alignment:
Q  33 tttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    |||||||||||| ||||||||||  |||||  ||| |||||||||| |||| ||| |||||||||   ||| ||| || |||||||||||| ||||||    
T  35583423 tttattgaaaac-aacaattatttgttaaaaattatatatttaatacaaaatacacaagtttcaatgtaaacttaatattttaaacttcttcacatgt 35583519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 34249718 - 34249809
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat--gttacatatttaatataaaaaacataagtttcaagtcaaagttac 108  Q
    ||||||| |||||||| |||||||| ||  ||||||| ||||||   |||| ||||||||||||||| ||| ||||| |||| |||| ||||    
T  34249718 aaaagtattaatttttcattgaaaaacactaattatttattaaaaaagttaaatatttaatataaaatacacaagttccaagacaaacttac 34249809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 31366075 - 31365962
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  31366075 ttttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagttccaagtcaaagttactaatttaaacttcttaacatg 31365976  T
Q  130 tataaatttgcaca 143  Q
    || |||||||||||    
T  31365975 tacaaatttgcaca 31365962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 169 - 274
Target Start/End: Complemental strand, 32291849 - 32291744
Alignment:
Q  169 ttaaaaatagacattttatattgaaaacaataataatatttaaacatctaaaaagttttaaacaataattttgcaacataagattttctatatacttgtg 268  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32291849 ttaaaagtagacattttatattgaaaataataataatatttaaacatctaaaaagttttaaacaataattttgcaacataagattttctatatatttgtg 32291750  T
Q  269 cctttg 274  Q
    ||||||    
T  32291749 cctttg 32291744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 2795565 - 2795689
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  2795565 aaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaac 2795664  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  2795665 ttcttaacatgtgcaaatttgcaca 2795689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 12642129 - 12642005
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||    
T  12642129 aaaagtagtaatttttcattgaaaaccaacaattatcgtttaaatgttacatatttaatataaaaaacacaagttccaaatcaaagttattaatttaaac 12642030  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  12642029 ttcttaacatgtgcaaatttgcaca 12642005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 4047454 - 4047578
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  4047454 aaaagtagtaacttttcattgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaac 4047553  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  4047554 ttcttaacatgtgcaaatttgcaca 4047578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 15190914 - 15191026
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatat-aaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |||||| ||||||    
T  15190914 aaaagtagtaatttttcattgaaaacaaacaattattgattaaaagttacatatttaatataaaaaaacacaagtttcaagtcaaaattactactttaaa 15191013  T
Q  118 cttcttaacatgt 130  Q
    |||||||||||||    
T  15191014 cttcttaacatgt 15191026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 30328463 - 30328352
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||| |||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  30328463 aaaagtagtcatttttcattaaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaac 30328364  T
Q  119 ttcttaacatgt 130  Q
    ||||||||||||    
T  30328363 ttcttaacatgt 30328352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 9184249 - 9184360
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||   |||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  9184249 aaaagtagtaacttttcattgaaaaccaataattattgattaaaaactacatatttaatataaaaaacacaagttccaagttaaagttactactttaaac 9184348  T
Q  119 ttcttaacatgt 130  Q
    ||||||||||||    
T  9184349 ttcttaacatgt 9184360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 14466598 - 14466506
Alignment:
Q  51 ttattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||    
T  14466598 ttattgattaaaagctacatatttaatataaaaaacacaagtttcaagttaaagttactactttaaacttcttaacatgtctaaatttgcaca 14466506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 34578053 - 34578177
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||| |||||||| |||||||| |||||||| ||||||||| | |||||||||||||||||||| | |||||| |||| |||||||||| |||||||    
T  34578053 aaaagtaataatttttcattgaaaatcaacaattgttgattaaaagctacatatttaatataaaaaatacaagttttaagttaaagttactattttaaac 34578152  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    || |||||||||  |||||||||||    
T  34578153 tttttaacatgtgcaaatttgcaca 34578177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 41350244 - 41350368
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||| |||||||  | |||||| ||||||||||| |||||| ||||||||||||||||||||| || ||||| ||||||||| |||||| |||||||    
T  41350244 aaaagtattaattttgcactgaaaatcaacaattatttattaaaagttacatatttaatataaaaagcacaagttccaagtcaaaattactactttaaac 41350343  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  41350344 ttcttaacatgtgcaaatttgcaca 41350368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 11376001 - 11376126
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaaca-taagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| |||||||| ||| ||||||| |||||| | ||||||||||||||||||||||  || ||||||||||||||||||| ||||||    
T  11376001 aaaagtagtaacttttcattgaaaatcaataattatttattaaaagctacatatttaatataaaaaacacaaaatttcaagtcaaagttactactttaaa 11376100  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||| ||| ||||||||||||| ||||    
T  11376101 ctttttatcatgtataaatttacaca 11376126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 31 - 142
Target Start/End: Original strand, 28629932 - 28630043
Alignment:
Q  31 tttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| |||| |||||| |||| || || ||||||||||||| |||||    
T  28629932 ttttcattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagtctcaagttaaagatattactttaaacttcttatcatgt 28630031  T
Q  131 ataaatttgcac 142  Q
      ||||||||||    
T  28630032 gcaaatttgcac 28630043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 11636773 - 11636897
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgtt-acatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| |||||||||||||||||| | ||||||  || ||||||||||||||||   || |||||||||||||||||||||| ||||||    
T  11636773 aaaagtagtaacttttcattgaaaaccaacaattaattattaaaaatttacatatttaatataaatg-cacaagtttcaagtcaaagttactactttaaa 11636871  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  11636872 cttcttatcatgtgcaaatttgcaca 11636897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8103716 - 8103592
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||||||||||| |||||||||| | ||||||  | |||||| |||||||||||  || ||||| |||||||||||||||| ||||||    
T  8103716 aaaaatagtaactttttattgaaa-ccaacaattaattattaaaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaa 8103618  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  8103617 cttcttatcatgtgcaaatttgcaca 8103592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 24329772 - 24329660
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| |||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||   | ||||| |||||||||||||| | ||||||    
T  24329772 aaaagtagtaatttttaattgaaaaacaacatttatttatttaaaagatacctatttaatataaaatgtacaagttccaagtcaaagttaccactttaaa 24329673  T
Q  118 cttcttaacatgt 130  Q
    ||| |||||||||    
T  24329672 ctttttaacatgt 24329660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 16174758 - 16174636
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| |||||||||||||||||| | ||| |||  ||||||||||||||| |||  || ||||||||| |||||||||||| ||||||    
T  16174758 aaaagtagtaacttttcattgaaaaccaacaattaattattaaaaacttacatatttaatat-aaatgcacaagtttcaattcaaagttactactttaaa 16174660  T
Q  118 cttcttaacatgtataaatttgca 141  Q
     ||||||  ||||  |||||||||    
T  16174659 tttcttatgatgtgcaaatttgca 16174636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 143
Target Start/End: Original strand, 30893741 - 30893795
Alignment:
Q  89 aagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||| ||||||||||||||| |||||||||||||||||||  |||||||||||    
T  30893741 aagttttaagtcaaagttactattttaaacttcttaacatgtgcaaatttgcaca 30893795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 5958260 - 5958196
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaa 82  Q
    |||||||||||||||| |||||||| ||||||||| | ||| |||  ||||||||||||||||||    
T  5958260 aaaagtagtaatttttcattgaaaatcaacaattaattattaaaaatttacatatttaatataaa 5958196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 18150454 - 18150566
Alignment:
Q  19 aaaagtagtaat-tttttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaa 116  Q
    |||||||||||  ||||||||||| | || |||||||| |||||| ||||| |||||||||| |||| | | |||||  ||  |||| |||||| |||||    
T  18150454 aaaagtagtaaagtttttattgaataacaccaattatttattaaaatgttatatatttaatacaaaatatacaagttctaacgcaaaattactattttaa 18150553  T
Q  117 acttcttaacatg 129  Q
    |||||||||||||    
T  18150554 acttcttaacatg 18150566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 139
Target Start/End: Original strand, 15837327 - 15837437
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacat 128  Q
    |||||||||||||| ||| ||||||| |||||| |||   |||||||||||||||  || |||||||||  |||| |||||| ||||   |||||||||     
T  15837327 ttttttattgaaaaacaataattatttattaaaatgtattatatttaatataaaatgcacaagtttcaatacaaatttactattttagttttcttaacaa 15837426  T
Q  129 gtataaatttg 139  Q
    || ||||||||    
T  15837427 gtgtaaatttg 15837437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 23995466 - 23995428
Alignment:
Q  105 ttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  23995466 ttactattttaaacttcttaacatgtacaaatttgcaca 23995428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 31567622 - 31567505
Alignment:
Q  25 agtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    ||||| ||||||||||||| ||| ||||||| ||||||    ||||||||||||||||||   | || ||||||| |||| |||| | |||||| || ||    
T  31567622 agtaactttttattgaaaaacaataattattcattaaaaaactacatatttaatataaaatgaacaaatttcaagacaaaattaccattttaaatttttt 31567523  T
Q  124 aacatgtataaatttgca 141  Q
    |||||||  |||||||||    
T  31567522 aacatgtgcaaatttgca 31567505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 32020069 - 32019996
Alignment:
Q  70 tatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| || ||| ||||| |||| |||| |||| | |||||| ||||||||||||  |||||||||||    
T  32020069 tatttaatatagaatacacaagttccaagacaaacttaccattttaaatttcttaacatgtgcaaatttgcaca 32019996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 143
Target Start/End: Complemental strand, 15241070 - 15240962
Alignment:
Q  36 attgaaaaccaacaattattgattaaatg-ttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataa 134  Q
    |||||||| ||||||||||| ||||||   ||| ||||||||||||| |  || || ||||||  |||| ||| || ||| ||||| |||||||||| ||    
T  15241070 attgaaaaacaacaattatttattaaaaaattatatatttaatataacatgcacaaatttcaatacaaatttaatattttgaactttttaacatgtacaa 15240971  T
Q  135 atttgcaca 143  Q
    |||||||||    
T  15240970 atttgcaca 15240962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 9332003 - 9332127
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9332003 aaaagtagtaacttttcattgaaaatcaacaattattgattaaatgttacatatttaatataaaaaacacaagtttcaagtcaaagttactaatttaaac 9332102  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  9332103 ttcttaacatgtgcaaatttgcaca 9332127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 36548596 - 36548472
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||| |||||||||||||||||||||||    
T  36548596 aaaagtagtaattttttattgaaaaccaacaattattgattaaatattacatatttaatataaaaaatacaaattttaagtcaaagttactaatttaaac 36548497  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  36548496 ttcttaacatgtgcaaatttgcaca 36548472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 18102364 - 18102242
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataa-aaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  18102364 agtagtaatttttcattgaaaatcaacaattattgattaaatgttacatatttaatataaaaaaacacaagtttcaagtcaaagttattaatttaaactt 18102265  T
Q  121 cttaacatgtataaatttgcaca 143  Q
    ||||||||||  |||||||||||    
T  18102264 cttaacatgtgcaaatttgcaca 18102242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 47120330 - 47120228
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  47120330 aaaagtagtaatttttcattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaagttccaagtcaaagttactaatttaaac 47120231  T
Q  119 ttc 121  Q
    |||    
T  47120230 ttc 47120228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 19889382 - 19889506
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  19889382 aaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaac 19889481  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||||||||    
T  19889482 ttcttatcatgtgcaaatttgcaca 19889506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 39757246 - 39757122
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| |||||||| |||||||||||||||||| | |||||||||||||||||||||| || |||||||| |||||||||| |||||||    
T  39757246 aaaagtagtaatttttcattgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacacaaatttcaagttaaagttactattttaaac 39757147  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  39757146 ttcttaacatgtgcaaatttgcaca 39757122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 5909418 - 5909294
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||| ||||| |||| |||||||||||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  5909418 aaaagcagtaacttttcattgaaaaccaacaattatttattaaaagctacatatttaatataaaaaacacaagtttcaagtcaaagttactactttaaac 5909319  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||| ||||    
T  5909318 ttcttatcatgtgcaaatttacaca 5909294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 384566 - 384444
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| |||||||||||||||||| | |||||||||||||||||||| | ||||| ||||| |||||||||| |||||||    
T  384566 aaaagtagtaacttttcattgaaaatcaacaattattgattaaaagctacatatttaatataaaaaaaacaagttccaagttaaagttactactttaaac 384467  T
Q  119 ttcttaacatgtataaatttgca 141  Q
    ||||||||||||  |||||||||    
T  384466 ttcttaacatgtgcaaatttgca 384444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 3562014 - 3561890
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||| ||||| |||| |||||||| ||| |||||||||||||| | |||||||||||||||||||||| |||||| |||| |||||||||| |||||||    
T  3562014 aaaagcagtaacttttcattgaaaatcaataattattgattaaaagctacatatttaatataaaaaacacaagttttaagttaaagttactactttaaac 3561915  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  3561914 ttcttaacatgtgcaaatttgcaca 3561890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 12086067 - 12085943
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| ||||  ||||||| ||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  12086067 aaaagtagtaacttttcgttgaaaatcaacaattatttattaaaagttaaatatttaatataaaaaacacaagtttcaagtcaaaattacttatttaaac 12085968  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||  ||||  |||||||||||    
T  12085967 ttcttattatgtgcaaatttgcaca 12085943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 8170593 - 8170683
Alignment:
Q  49 aattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttg 139  Q
    |||||||||||||| |||| ||||||||||||||||| | |||||| |||| |||||||||| ||||||||| ||||||||| ||||||||    
T  8170593 aattattgattaaaagttatatatttaatataaaaaataaaagttttaagttaaagttactactttaaactttttaacatgtgtaaatttg 8170683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 23982892 - 23982767
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatg-ttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||| ||| |||||||||||||| | ||||||   ||| ||||||||||||||| ||| ||||| |||||||||||||||| ||||||    
T  23982892 aaaagtagtaacttttcattcaaaaccaacaattaattattaaaaacttaaatatttaatataaaatacacaagttccaagtcaaagttactactttaaa 23982793  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||||| |||  |||||||||||    
T  23982792 tttcttaacgtgtgcaaatttgcaca 23982767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 7170044 - 7170168
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||||||||||| |||||||||| | ||||||  | |||||| |||||||||||  || ||||| |||||||||||||||| ||||||    
T  7170044 aaaaatagtaactttttattgaaa-ccaacaattaattattaaaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaa 7170142  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  7170143 cttcttatcatgtgcaaatttgcaca 7170168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 22334099 - 22334033
Alignment:
Q  77 tataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||||   |||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  22334099 tataaaaaacacgtgtttcaagtcaaagttactactttaaacttcttaacatgtacaaatttgcaca 22334033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8091449 - 8091324
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||| || ||||||||||||| ||| ||||||| ||||||  |||| |||||||| | ||||   | ||||| |||  ||||||||||| ||||||    
T  8091449 aaaagtagcaaatttttattgaaaatcaataattatttattaaaaagttatatatttaacacaaaatgtaaaagttacaatgcaaagttactattttaaa 8091350  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||| ||||||||||||    
T  8091349 cttcttaacatgtgtaaatttgcaca 8091324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 25709536 - 25709411
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||||||||| || ||||||| ||| ||||||  | ||| |||||||||| |||   | ||||| |||  ||||||||||| ||||||    
T  25709536 aaaagtagtaattttttattgataaacaacaataatttattaaaaagctacctatttaatatgaaatgaacaagttccaatacaaagttactattttaaa 25709437  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  25709436 cttcttaacatgtgcaaatttgcaca 25709411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 47457598 - 47457473
Alignment:
Q  19 aaaagtagtaatttttt-attgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaa 116  Q
    ||||||||||||||||| ||||||||  |||||||||| ||| ||| | |||| || ||||||||||  ||||| || |||||||||||||||| |||||    
T  47457598 aaaagtagtaatttttttattgaaaat-aacaattatttatttaaaagctacacatataatataaaatgcataaattccaagtcaaagttactactttaa 47457500  T
Q  117 acttcttaacatgtataaatttgcaca 143  Q
    | || |||||||||  |||||||||||    
T  47457499 attttttaacatgtgcaaatttgcaca 47457473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 24463091 - 24462967
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||| ||||||||||| ||||| |||| ||||||    ||||||||||||||||||   | ||  || |||||||||||| || ||||||    
T  24463091 aaaagtagtaatttcttattgaaaac-aacaagtatttattaaaaaactacatatttaatataaaatgtacaaactttaagtcaaagttattattttaaa 24462993  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  24462992 cttcttaacatgtgcaaatttgcaca 24462967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 41331545 - 41331468
Alignment:
Q  66 tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||||||  || ||||| |||||||||||||||| |||||| |||||| |||||  |||||||||||    
T  41331545 tacatatttaatataaaatgcacaagttccaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcaca 41331468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 47708008 - 47707911
Alignment:
Q  32 ttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacat 128  Q
    |||||| ||||| ||||||||||| ||||||  |||| |||||||||| ||||   ||||||||||| ||||| |||||| |||||||||||||||||    
T  47708008 ttttatggaaaaacaacaattatttattaaaaagttatatatttaatacaaaatgtataagtttcaattcaaaattactattttaaacttcttaacat 47707911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 8594998 - 8595063
Alignment:
Q  77 tataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| ||||| ||||| ||||| |||| ||||||||||||||||||| ||||||||||||    
T  8594998 tataaaaaacacaagttccaagttaaagtcacta-tttaaacttcttaacatgtgtaaatttgcaca 8595063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 24250355 - 24250417
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataa 81  Q
    ||||||| ||| |||| |||||||||||||||||||| |||||| | ||||||||||||||||    
T  24250355 aaaagtattaacttttcattgaaaaccaacaattatttattaaaagctacatatttaatataa 24250417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 39869164 - 39869274
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||| |||||||||||||||||| | ||| |||  ||||||||||||||| |||  || ||||||||||||||| |||||| |||| |    
T  39869164 aaaaatagtaacttttcattgaaaaccaacaattaattattaaaaatttacatatttaatat-aaatgcacaagtttcaagtcaaa-ttactactttaca 39869261  T
Q  118 cttcttaacatgt 130  Q
    ||||||| |||||    
T  39869262 cttcttatcatgt 39869274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 7899617 - 7899498
Alignment:
Q  25 agtaattttttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    |||||||||| |||||||| || |||| ||| |||||| ||||| ||||||||||||||| | | |||||  ||| |||| |||| | |||||| || ||    
T  7899617 agtaatttttcattgaaaaacaccaataatttattaaaatgttatatatttaatataaaatatacaagttataagacaaacttaccattttaaatttttt 7899518  T
Q  124 aacatgtataaatttgcaca 143  Q
    |||||||  |||||||||||    
T  7899517 aacatgtgcaaatttgcaca 7899498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 16800609 - 16800543
Alignment:
Q  31 tttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaa 97  Q
    ||||||||||||| ||||||||||| ||||||| ||  |||||||||| ||||  ||||||||||||    
T  16800609 tttttattgaaaaacaacaattatttattaaattttttatatttaatacaaaattcataagtttcaa 16800543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 19868155 - 19868245
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttac 108  Q
    ||||||||||| |||| |||||||| || |||||||| || |||  |||| ||||||||||||||| ||| |||||||||| |||| ||||    
T  19868155 aaaagtagtaaattttcattgaaaaacaccaattatttatcaaaaagttatatatttaatataaaatacacaagtttcaagacaaacttac 19868245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 24250602 - 24250664
Alignment:
Q  81 aaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||| ||||| |||||||||||||||| ||||||||||||| |||||  |||||| ||||    
T  24250602 aaaaacacaagttccaagtcaaagttactactttaaacttcttatcatgttcaaatttccaca 24250664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 26300665 - 26300733
Alignment:
Q  71 atttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttg 139  Q
    |||||||| |||| | | ||||||||| |||||||||||| ||||||||| |||||||||  |||||||    
T  26300665 atttaatacaaaatatacaagtttcaattcaaagttactattttaaactttttaacatgtgcaaatttg 26300733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 24699181 - 24699240
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgatta-aatgttacatatttaatataaa 82  Q
    |||||| |||| |||||||| ||||||||||| |||| || |||||||||||||||||||    
T  24699181 tagtaacttttcattgaaaaacaacaattatttattataaagttacatatttaatataaa 24699240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 33072104 - 33072147
Alignment:
Q  100 caaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| |||||| ||||||||||||| |||||||||||    
T  33072104 caaagttactattttaaatttcttaacatgtacaaatttgcaca 33072147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 3530242 - 3530126
Alignment:
Q  27 taattttttattgaaaaccaacaattattgattaaatg-ttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaa 125  Q
    |||||||||||||||||| |||||||||| ||||||   ||| |||||| ||||||||  || || ||||||   ||| |||||| | ||||| ||||||    
T  3530242 taattttttattgaaaac-aacaattatttattaaaaaattatatatttgatataaaatgcacaaatttcaataaaaacttactattctaaacgtcttaa 3530144  T
Q  126 catgtataaatttgcaca 143  Q
     |||| ||||||||||||    
T  3530143 tatgtgtaaatttgcaca 3530126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 12624683 - 12624798
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgattaaatg-ttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttct 122  Q
    |||| |||||||||||||||  | |||||||| ||||||   ||  ||||||||||||||| ||| |||||| ||| |||| |||| | |||||| ||||    
T  12624683 tagttattttttattgaaaaatatcaattatttattaaaaacttgtatatttaatataaaatacacaagttt-aagacaaacttaccattttaaatttct 12624781  T
Q  123 taacatgtataaatttg 139  Q
    ||||||||  |||||||    
T  12624782 taacatgtgcaaatttg 12624798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 12650862 - 12650973
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||| ||||||||| | |||||||| ||||||  |||| || ||||| |||||| ||  |||||||||| |||| |||| | ||||||    
T  12650862 aaaaatagtaacttttcattgaaaactaccaattatttattaaaaagttatat-tttaacataaaatactgaagtttcaagacaaacttaccattttaaa 12650960  T
Q  118 cttcttaacatgt 130  Q
     ||||||||||||    
T  12650961 tttcttaacatgt 12650973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 29190952 - 29190828
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||||||    
T  29190952 aaaagtagtaatttttcattgaaaaccaacaattattgattaaatgttgcatatttaatattaaaaacacaagttccaagtcaaagttactaatttaaac 29190853  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  29190852 ttcttaacatgtgcaaatttgcaca 29190828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 53961364 - 53961488
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||    
T  53961364 aaaagtagtaatttttcattgaaaatcaacaattattgtttaaatgttacatatttaatataaaaaacacaaatttcaagtcaaaattactaatttaaac 53961463  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  53961464 ttcttaacatgtgcaaatttgcaca 53961488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 4329636 - 4329760
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  4329636 aaaagtagtaatttttaattgaaaaccaacgattattgattaaaagttacatatttaatataaaaaacataaatttcaagtcaaagttactactttaaac 4329735  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    || ||||||| |  |||||||||||    
T  4329736 tttttaacatatgcaaatttgcaca 4329760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 7349730 - 7349854
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||| ||| |||| ||||||||||||||||||||  ||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  7349730 aaaagtaataacttttcattgaaaaccaacaattatttgttaaaagttacatatttaatataaaaaacacaagttttaagtcaaagttactactttaaac 7349829  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||| |||||| ||||    
T  7349830 ttcttatcatgtacaaatttacaca 7349854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 41415693 - 41415569
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| ||||||||||| |||||| | |||||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  41415693 aaaagtagtaacttttaattgaaaatcaacaattatttattaaaagctacatatttaatataaaaaacacaaatttcaagtcaaagttactactttaaac 41415594  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    || ||| |||||  |||||||||||    
T  41415593 ttattatcatgtgcaaatttgcaca 41415569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 36000076 - 35999959
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||       ||||| |||||||||| |||||||    
T  36000076 aaaagtagtaactttttattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaaca-------caagttaaagttactactttaaac 35999984  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  35999983 ttcttaacatgtgcaaatttgcaca 35999959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 48910938 - 48910816
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||||||||||||  ||||||||||||||||| | ||||||||||| |||||||||| || || | ||| |||||||||| |||||||    
T  48910938 aaaagtagtaattttttattgaaaattaacaattattgattaaaagctacatatttaacataaaaaacacaaattcctagttaaagttactactttaaac 48910839  T
Q  119 ttcttaacatgtataaatttgca 141  Q
    |||||||||| |  |||||||||    
T  48910838 ttcttaacatatgcaaatttgca 48910816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 23553623 - 23553736
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatg 129  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||| | || ||| |||| |||||||||| ||||||||| ||||||||    
T  23553623 ttttttattgaaaaccaacaattattgattaaaaactacatatttaatataaaaaatacaaattttaagttaaagttactactttaaactttttaacatg 23553722  T
Q  130 tataaatttgcaca 143  Q
    |  |||||||||||    
T  23553723 tgcaaatttgcaca 23553736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 10389404 - 10389280
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||  |||||||| |||||| || |||     
T  10389404 aaaagtattaacttttaattgaaaaccaacaattattgattaaaagttacatatttcatataaaaaacacaagttctaagtcaaaattactacttgaaat 10389305  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    || |||||||||  |||||| ||||    
T  10389304 tttttaacatgtgcaaatttacaca 10389280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 23051490 - 23051394
Alignment:
Q  47 acaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||| |||||| ||||||||||| |||||||||||| |||||||||||||||||||||| |||||| |||||| |||||  |||||||||||    
T  23051490 acaattatttattaaaagttacatattttatataaaaaacacaagtttcaagtcaaagttactactttaaatttcttatcatgtgcaaatttgcaca 23051394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 16667521 - 16667396
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| |||||||| ||||| ||||| ||||||  | |||||||||||||||||| ||| ||||||||||| ||| |||  | ||||||    
T  16667521 aaaagtagtaatttttcattgaaaaacaacacttatttattaaaaagctacatatttaatataaaatacacaagtttcaagttaaaattatcattttaaa 16667422  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  16667421 cttcttaacatgtgcaaatttgcaca 16667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 120
Target Start/End: Complemental strand, 10813631 - 10813529
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacata-tttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||| ||| |||||||||||||||||||||||||  ||||| |||||||| |||||| ||||||||| || ||| ||||||||||||||| ||||||    
T  10813631 aaaagtaataactttttattgaaaaccaacaattatttgttaaaagttacatattttaatttaaaaaacacaaattttaagtcaaagttactactttaaa 10813532  T
Q  118 ctt 120  Q
    |||    
T  10813531 ctt 10813529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 47327029 - 47326904
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| |||||||| ||| | ||||| ||||||    |||||||||||||| |||  || ||||| |||||||||||||| | ||||||    
T  47327029 aaaagtagtaatttttcattgaaaaacaaaacttatttattaaaaaactacatatttaatatgaaatgcaaaagttccaagtcaaagttaccactttaaa 47326930  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  47326929 cttcttaacatgtgcaaatttgcaca 47326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 47341825 - 47341700
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| |||||||| ||| | ||||| ||||||    |||||||||||||| |||  || ||||| |||||||||||||| | ||||||    
T  47341825 aaaagtagtaatttttcattgaaaaacaaaacttatttattaaaaaactacatatttaatatgaaatgcaaaagttccaagtcaaagttaccactttaaa 47341726  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  47341725 cttcttaacatgtgcaaatttgcaca 47341700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 54495774 - 54495649
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||| ||||||| ||| | ||||| ||||||  | |||||||||||||| |||  || ||||| ||||| |||||||| | ||||||    
T  54495774 aaaagtagtaatttttttttgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagttaaagttaccactttaaa 54495675  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  54495674 cttcttaacatgtgcaaatttgcaca 54495649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 49228398 - 49228457
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaata 78  Q
    ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||    
T  49228398 aaaagtagtaacttttcattgaaaaccaacaattgttgattaaatgttacatatttaata 49228457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 143
Target Start/End: Original strand, 49228754 - 49228820
Alignment:
Q  77 tataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  49228754 tataaaaaacacaagttccaagtcaaagttactaatttaaacttcttaacacgtgcaaatttgcaca 49228820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 8736947 - 8736823
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||| ||| |||||||||||||||| |||  ||  |||| |||||||||||||| | ||||||    
T  8736947 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagttacatatttaatatgaaatgca-cagttccaagtcaaagttaccactttaaa 8736849  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     ||||||||||||  |||||| ||||    
T  8736848 tttcttaacatgtgcaaatttacaca 8736823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 27362432 - 27362557
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| || |||  | |||||||||||||| |||  || || || ||||||||| |||| | ||||||    
T  27362432 aaaagtagtaattttttattgaaaaacaaaacttatttatcaaaaagctacatatttaatatgaaatgcacaaattccaagtcaaaattaccactttaaa 27362531  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  27362532 cttcttaacatgtgcaaatttgcaca 27362557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 36971326 - 36971439
Alignment:
Q  30 ttttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacat 128  Q
    |||||||||||||| ||||||  ||| ||| ||| | ||||||||||||||||||   | ||||||||||  |||||||||| |||||| ||||||||||    
T  36971326 ttttttattgaaaaacaacaaaaatttatttaaaggctacatatttaatataaaatgaacaagtttcaagataaagttactattttaaatttcttaacat 36971425  T
Q  129 gtataaatttgcac 142  Q
    |  |||||||||||    
T  36971426 gcgtaaatttgcac 36971439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 49650252 - 49650319
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaac 86  Q
    ||||| ||||| |||| ||| ||||| |||||||||||| |||||||||||| |||||||||||||||    
T  49650252 aaaagaagtaacttttcattaaaaacaaacaattattgaataaatgttacatgtttaatataaaaaac 49650319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 2096924 - 2097037
Alignment:
Q  31 tttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatg 129  Q
    ||||||||||||| ||||||||||| ||| ||| |||| |||||||||||||||  || ||||| |||  |||| |||| | ||| ||||||||||||||    
T  2096924 tttttattgaaaaacaacaattatttattaaaaagttatatatttaatataaaatgcacaagttccaatacaaacttaccattttgaacttcttaacatg 2097023  T
Q  130 tataaatttgcaca 143  Q
    |  |||||| ||||    
T  2097024 tgcaaattttcaca 2097037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 39539510 - 39539607
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    ||||||||||| |||||||| ||||| ||||| ||||||  | |||||||||||||| |||  || ||||||||||||| |||||| | |||||||||    
T  39539510 tagtaatttttcattgaaaaacaacacttatttattaaaaagctacatatttaatatgaaattcacaagtttcaagtcatagttaccattttaaactt 39539607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 49181113 - 49181238
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||| ||  ||| |||||||| ||||||| ||| ||| ||| ||||||||||||||||||||  || ||||| |||  |||| |||||| ||| ||    
T  49181113 aaaagtagcaacctttaattgaaaaacaacaatcatttattgaaaagttacatatttaatataaaatgcacaagttacaatacaaatttactattttgaa 49181212  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||| ||  |||||||||||    
T  49181213 cttcttaacaggtgcaaatttgcaca 49181238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 16069347 - 16069301
Alignment:
Q  16 atcaaaagtagtaattttttattgaaaaccaacaattattgattaaa 62  Q
    ||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  16069347 atcaagagtagtaattttttattgaaaaacaacaattatttattaaa 16069301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 19468238 - 19468360
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||| ||||| ||| ||| ||||||||||| ||| ||| |||  ||||||||||| |||   | |||||||||  |||| || ||| |||||||||    
T  19468238 agtagtaactttttcttggaaaacaacaattatttattcaaaagttttatatttaatattaaatgtacaagtttcaatacaaaatttctattttaaactt 19468337  T
Q  121 cttaacatgtataaatttgcaca 143  Q
    ||||||||||  |||||||||||    
T  19468338 cttaacatgtgcaaatttgcaca 19468360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 23438201 - 23438321
Alignment:
Q  23 gtagtaattttttattgaaaaccaacaattattgattaaatgtta-catatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttc 121  Q
    ||||||| ||||||||||||| ||||||| ||| |||||| |  | |||||||| |||||||   | |||||||||  ||||||||||| |||||| |||    
T  23438201 gtagtaactttttattgaaaaacaacaataatttattaaaaggcaacatattta-tataaaatgaacaagtttcaaaacaaagttactattttaaaattc 23438299  T
Q  122 ttaacatgtataaatttgcaca 143  Q
    | |||||||  |||||||||||    
T  23438300 tcaacatgtgcaaatttgcaca 23438321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 25843332 - 25843459
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatg--ttacatatttaatataaaaa--acataagtttcaagtcaaagttactaattt 114  Q
    ||||||||||| ||||||||||||| ||||||  |||  |||||    ||| |||||||||||||||   ||| |||||  ||| ||||||||||| |||    
T  25843332 aaaagtagtaactttttattgaaaaacaacaaccatttgttaaaaagcttatatatttaatataaaatgcacaaaagttctaagacaaagttactacttt 25843431  T
Q  115 aaacttcttaacatgtataaatttgcac 142  Q
    |||||| ||||||| || ||||||||||    
T  25843432 aaactttttaacatctacaaatttgcac 25843459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 1378066 - 1378171
Alignment:
Q  25 agtaattttttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    |||||||| ||||||||||| | |||||||| |||||| ||||| ||||||||||| |||   | ||||||||||  ||| |||| | |||||| |||||    
T  1378066 agtaatttgttattgaaaac-atcaattatttattaaaatgttatatatttaatattaaatgtacaagtttcaagataaatttaccattttaaatttctt 1378164  T
Q  124 aacatgt 130  Q
    |||||||    
T  1378165 aacatgt 1378171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 19451034 - 19450912
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||| ||||| ||| ||| ||||||||||| ||| ||| |||  ||||||||||| |||   | ||||| |||  |||| || ||| |||||||||    
T  19451034 agtagtaactttttcttggaaaacaacaattatttattcaaaagttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaactt 19450935  T
Q  121 cttaacatgtataaatttgcaca 143  Q
    ||||||||||  |||||||||||    
T  19450934 cttaacatgtgcaaatttgcaca 19450912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 41970436 - 41970548
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacat 128  Q
    ||||||||||||||| || ||||||| | |||| ||||| ||  ||||||||||| || ||||||||||  |||| |||||| ||||||||| |||| ||    
T  41970436 ttttttattgaaaac-aataattatttactaaaatgttatattattaatataaaatacgtaagtttcaatacaaaattactattttaaactttttaatat 41970534  T
Q  129 gtataaatttgcaca 143  Q
     || |||||||||||    
T  41970535 ata-aaatttgcaca 41970548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 52391342 - 52391464
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||| ||||| ||||||| ||||||||||| ||| ||| |||  ||||||||||| |||   | ||||| |||  |||| || ||| |||||||||    
T  52391342 agtagtaacttttttttgaaaaacaacaattatttattcaaaagttttatatttaatattaaatgtacaagttccaatacaaaatttctattttaaactt 52391441  T
Q  121 cttaacatgtataaatttgcaca 143  Q
    ||||||||||  |||||| ||||    
T  52391442 cttaacatgtgcaaatttacaca 52391464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 143
Target Start/End: Complemental strand, 9971700 - 9971672
Alignment:
Q  115 aaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||||||||||||||||||    
T  9971700 aaacttcttaacatgtataaatttgcaca 9971672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 37784997 - 37784885
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||| || ||||||||||||| ||| ||| ||| ||| ||| ||||||||||||| ||||||  || || || |||   ||| |||||| ||| ||    
T  37784997 aaaagtagcaactttttattgaaaaacaataatcatttattaaaaagttacatatttaacataaaatgcacaaattacaatataaatttactattttgaa 37784898  T
Q  118 cttcttaacatgt 130  Q
    |||||||||||||    
T  37784897 cttcttaacatgt 37784885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 16875161 - 16875037
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  16875161 aaaagtagtaattttttattgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaagtttcaagttaaagttactactttaaac 16875062  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  16875061 ttcttaacatgtgcaaatttgcaca 16875037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 11610956 - 11611080
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  11610956 aaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaac 11611055  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||||||||    
T  11611056 ttcttatcatgtgcaaatttgcaca 11611080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 130
Target Start/End: Original strand, 50364232 - 50364343
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  50364232 aaaagtagtaacttataattgaaaaccaacaattattgattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaac 50364331  T
Q  119 ttcttaacatgt 130  Q
    |||||| |||||    
T  50364332 ttcttagcatgt 50364343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 54621354 - 54621256
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  54621354 aaaagtagtaatttttcattaaaaaccaacaattattgattaaatgttacatatttaatataaaaaacacaacttccaagtcaaagttactaatttaaa 54621256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 20938098 - 20938223
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatat-aaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||| ||| |||||||||||||| |||||||||||||||||  ||||||||||||||| |||||||| ||||| |||||||||||||||| ||||||    
T  20938098 aaaagtaataactttttattgaaaactaacaattattgattaaaaattacatatttaatataaaaaaacacaagttccaagtcaaagttactactttaaa 20938197  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  20938198 cttcttatcatgtgcaaatttgcaca 20938223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 32553408 - 32553532
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| ||| |||||||  |||||| ||||||||||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  32553408 aaaagtagtaacttttcattgaaaatcaataattattagttaaatattacatatttaatataaaaaacacaagtttcaaattaaagttattaatttaaac 32553507  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||||||||| ||||||| ||||    
T  32553508 ttcttaacatgtgtaaatttacaca 32553532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 3863375 - 3863495
Alignment:
Q  23 gtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttct 122  Q
    ||||||| |||| |||||||| || ||||||||||||||| | |||||||||||||||||||||| ||||| ||||  |||||||||| |||||||||||    
T  3863375 gtagtaacttttcattgaaaatcagcaattattgattaaaagctacatatttaatataaaaaacacaagttccaagctaaagttactactttaaacttct 3863474  T
Q  123 taacatgtataaatttgcaca 143  Q
    ||||||||  |||||||||||    
T  3863475 taacatgtgcaaatttgcaca 3863495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 24978693 - 24978799
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    |||||| |||||||||| |||||| ||||||||||||||  ||||||||| ||| ||||||||| |||||||||||||| || |||| ||||||||| ||    
T  24978693 tagtaactttttattgagaaccaataattattgattaaaaattacatattaaatttaaaaaacacaagtttcaagtcaacgtaactactttaaacttgtt 24978792  T
Q  124 aacatgt 130  Q
    |||||||    
T  24978793 aacatgt 24978799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 13495335 - 13495460
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    ||||||||||||||||||  || ||||| ||||||||| |||||| ||||||    
T  13495335 aaaagtagtaattttttattgaaaatcaacaattatttattaaaaacctacatatttaatataaaatgcacaagttccaagtcaaaattactactttaaa 13495434  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||| ||||    
T  13495435 cttcttatcatgtgcaaattttcaca 13495460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 38389488 - 38389613
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||  | |||||||||||||| |||  || ||||| ||||||||| |||| | ||||||    
T  38389488 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccactttaaa 38389587  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  38389588 cttcttaacatgtgcaaatttgcaca 38389613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 51339320 - 51339252
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaaca 87  Q
    |||| ||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||    
T  51339320 aaaaatagtaatttttcattgaaaaccaacaattattgattaaaagctacgtatttaatataaaaaaca 51339252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 29686367 - 29686486
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    |||||| |||| | |||| | ||||||||||| |||||| | || |||| |||||||||||||| |||||  |||| |||||||||| ||||||||||||    
T  29686367 tagtaacttttcactgaatatcaacaattatttattaaaagctatatatgtaatataaaaaacacaagttctaagttaaagttactactttaaacttctt 29686466  T
Q  124 aacatgtataaatttgcaca 143  Q
    | |||||  |||||||||||    
T  29686467 atcatgtgcaaatttgcaca 29686486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 38786459 - 38786349
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||| ||||||||||||||||||||  |||||||||| ||||||   |||| ||||| |||||||  || || |||||| ||||| |||||| |||||||    
T  38786459 aaaaatagtaattttttattgaaaat-aacaattatttattaaaaaatacacatttagtataaaatccacaaatttcaaatcaaaattactattttaaac 38786361  T
Q  119 ttcttaacatgt 130  Q
    ||||||||||||    
T  38786360 ttcttaacatgt 38786349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 40497089 - 40497213
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||||||||||| | |||||||| | ||||||  | |||||| |||||||||||  || |||||  |||| |||||||||| ||||||    
T  40497089 aaaagtagtaactttttattgaaatc-aacaattaattattaaaaatctacatagttaatataaaatgcacaagttctaagttaaagttactactttaaa 40497187  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  40497188 cttcttatcatgtgcaaatttgcaca 40497213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 46492480 - 46492355
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||| |||| ||||||||||||| ||||||||||| |||||   |||| |||||||||| ||||   | |||||||||  ||||||||||| ||||||    
T  46492480 aaaagtggtaagtttttattgaaaaacaacaattatttattaacgagttatatatttaatacaaaatgtacaagtttcaatgcaaagttactactttaaa 46492381  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||||| |||  |||||||||||    
T  46492380 tttcttaacgtgtgaaaatttgcaca 46492355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 131
Target Start/End: Complemental strand, 1569322 - 1569214
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgatta-aatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttct 122  Q
    ||||||||||||||| |||| ||||||| ||| |||| || ||||||||| ||||||||||   | ||||| |||  |||||||| || |||||||||||    
T  1569322 tagtaattttttattaaaaaacaacaataatttattagaaagttacatatctaatataaaatgaacaagttccaatacaaagttattattttaaacttct 1569223  T
Q  123 taacatgta 131  Q
    |||||||||    
T  1569222 taacatgta 1569214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 36426548 - 36426421
Alignment:
Q  19 aaaagtagtaatttttt--attgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaattta 115  Q
    |||||||||||||||||  || ||||| ||| | ||||| ||||||  | |||||||||||||| |||  || ||||| ||||||||| |||| | ||||    
T  36426548 aaaagtagtaattttttttatcgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaaattaccacttta 36426449  T
Q  116 aacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||| ||||||| ||||    
T  36426448 aacttcttaacatgtgtaaatttacaca 36426421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 49396467 - 49396546
Alignment:
Q  64 gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||| |||||||||||||||  ||||| ||| || ||||| |||||| |||||||||||||| ||||| |||||||||||    
T  49396467 gttatatatttaatataaaatgcataaattttaattcaaatttactactttaaacttcttaatatgtacaaatttgcaca 49396546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 23523035 - 23523112
Alignment:
Q  66 tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||| |||  || ||||| ||||||||| |||| | |||||||||||||||||||  |||||||||||    
T  23523035 tacatatttaatatgaaatgcacaagttccaagtcaaaattaccactttaaacttcttaacatgtgcaaatttgcaca 23523112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 23638185 - 23638064
Alignment:
Q  20 aaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||| ||| ||||||||| || |||||||| | ||||  |||  ||||||||||||||| ||| |||||||||| | || |||| | ||||||     
T  23638185 aaagtagtaactttctattgaaaaacatcaattatttaataaaaagttgtatatttaatataaaatacacaagtttcaagactaacttaccattttaaat 23638086  T
Q  119 ttcttaacatgtataaatttgc 140  Q
    ||||||||||||  ||||||||    
T  23638085 ttcttaacatgtgcaaatttgc 23638064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 23803180 - 23803060
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||| ||||| ||||||| ||||||||||| ||| ||| |||  ||||||||||| ||| | | ||||| |||  |||| || ||| |||||||||    
T  23803180 agtagtaactttttcttgaaaaacaacaattatttattcaaaagttttatatttaatatgaaatatacaagttccaatgcaaaatttctattttaaactt 23803081  T
Q  121 cttaacatgtataaatttgca 141  Q
    ||||||||||  |||||||||    
T  23803080 cttaacatgtgcaaatttgca 23803060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 11611094 - 11611142
Alignment:
Q  95 caagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||||| ||||||||||||| |||||  |||||||||||    
T  11611094 caagtcaaagttactactttaaacttcttatcatgtgcaaatttgcaca 11611142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 141
Target Start/End: Complemental strand, 39364955 - 39364884
Alignment:
Q  70 tatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgca 141  Q
    ||||||||||||||  || ||||| |||| ||||||||||| || |||||| |||||||||  |||||||||    
T  39364955 tatttaatataaaatgcacaagttacaagacaaagttactatttaaaacttgttaacatgtgcaaatttgca 39364884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 46845577 - 46845534
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaa 62  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||    
T  46845577 aaaagtagaaattttttattgaaaatcaacaattatttattaaa 46845534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 35414863 - 35414821
Alignment:
Q  101 aaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||| ||| ||||||||||||||| ||||||||||||    
T  35414863 aaagttactattttgaacttcttaacatgtgtaaatttgcaca 35414821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 36812373 - 36812411
Alignment:
Q  92 tttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  36812373 tttcaaatcaaagttactactttaaacttcttaacatgt 36812411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 38785924 - 38786029
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattga-ttaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||||||||| ||||||| ||||||||||| | || || |||  |||||||||||||||   | ||||| |||  |||| || ||| |||||||||    
T  38785924 agtagtaatttttttttgaaaaacaacaattatttatttgaaagttttatatttaatataaaacgtacaagttccaatacaaaatttctattttaaactt 38786023  T
Q  121 cttaac 126  Q
    ||||||    
T  38786024 cttaac 38786029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 143
Target Start/End: Original strand, 41151734 - 41151799
Alignment:
Q  78 ataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||| | ||||| |||||  || |||||| ||||||||||||| ||||| ||||||||||||    
T  41151734 ataaaaaatacaagttccaagttcaaattactactttaaacttcttatcatgtgtaaatttgcaca 41151799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 51618103 - 51618213
Alignment:
Q  31 tttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    |||||| |||||| ||||||||||| ||||||   || |||||||||| ||||   | ||||| |||  ||||||||| | || ||||||||||||||||    
T  51618103 tttttactgaaaaacaacaattatttattaaaa--tatatatttaatacaaaatgtacaagttccaatgcaaagttacaatttgaaacttcttaacatgt 51618200  T
Q  131 ataaatttgcaca 143  Q
      |||||||||||    
T  51618201 gcaaatttgcaca 51618213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 23320122 - 23320210
Alignment:
Q  30 ttttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||| || |||||||| ||| ||| | || ||||||||||||||| |||  ||||||||| |||| |||| | ||||||    
T  23320122 ttttttattgaaaaacatcaattatttattaaaaagatatatatttaatataaaatacacgagtttcaagacaaatttaccattttaaa 23320210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 53794819 - 53794907
Alignment:
Q  33 tttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaactt 120  Q
    |||||||||||  |||||| ||| ||||||  ||||||||||||||||||||   ||||||||||||  |||||||  | |||||||||    
T  53794819 tttattgaaaagtaacaataatttattaaaaagttacatatttaatataaaatgaataagtttcaagataaagttataattttaaactt 53794907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 14377466 - 14377590
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||||||||||||||||||||||||  ||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  14377466 aaaagtagtaactttttattgaaaaccaacaattatttgttaaaagttacatatttaatataaaaaacacaagtttcaagtcaaagttactactttaaac 14377565  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||| |||||||||||    
T  14377566 ttcttatcatgtacaaatttgcaca 14377590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 16126695 - 16126571
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||| |||||||    
T  16126695 aaaagtagtaatttttcattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagtttcaagttaaagttactactttaaac 16126596  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  16126595 ttcttaacatgtgcaaatttgcaca 16126571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 16919290 - 16919166
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  16919290 aaaagtagtaactttttgttgaaaaccaacaattattgattaaaagttacatatttaatataaaaaacacaagtttcaagtcaaagttactactttaaac 16919191  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    || |||| ||||  |||||||||||    
T  16919190 ttgttaatatgtgcaaatttgcaca 16919166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 19228467 - 19228591
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  19228467 aaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaac 19228566  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  19228567 ttcttaacatgtgcaaatttgcaca 19228591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 26229989 - 26229866
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||    
T  26229989 aaaagtagtaattttttatt-aaaaccaacaattattgattaaaagttacatatttaatataaaaaatataaattttaagtcaaagttactattttaaac 26229891  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||||| || | |||||||||||    
T  26229890 ttcttaacctggacaaatttgcaca 26229866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 27665180 - 27665056
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  27665180 aaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaagttccaagtcaaagttactactttaaac 27665081  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||||||||    
T  27665080 ttcttatcatgtgcaaatttgcaca 27665056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 12016708 - 12016832
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||| |||||| |||||||    
T  12016708 aaaagtagtaactttttattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaaattactactttaaac 12016807  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||| ||||  |||||||||||    
T  12016808 ttcttaatatgtgcaaatttgcaca 12016832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 22705496 - 22705620
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||    
T  22705496 aaaagtagtaacttttcattgaaaaccaacaattattaatttaaagttacatatttaatataaaaaacacaagtttcaagttaaaattactactttaaac 22705595  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||| ||||  |||||||||||    
T  22705596 ttcttaaaatgtgcaaatttgcaca 22705620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 4821323 - 4821442
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    |||||| |||| |||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  4821323 tagtaacttttcattgaaaaccaacaattatttattaaaagctacatatttaatataaaaaacacaagtttcaaatcaaagttactactttaaacttctt 4821422  T
Q  124 aacatgtataaatttgcaca 143  Q
    | |||||  |||||||||||    
T  4821423 atcatgtgcaaatttgcaca 4821442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 8771021 - 8770898
Alignment:
Q  20 aaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaact 119  Q
    |||||||||| |||| | | |||||||||||||||| |||||| |||||||||||||||||||||||| || |||||||||||| |||||| ||||||||    
T  8771021 aaagtagtaacttttcaataaaaaccaacaattatttattaaaagttacatatttaatataaaaaacaaaaatttcaagtcaaaattactactttaaact 8770922  T
Q  120 tcttaacatgtataaatttgcaca 143  Q
    |||||||||||  |||||||||||    
T  8770921 tcttaacatgtgcaaatttgcaca 8770898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 16123320 - 16123444
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||| ||||| |||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||| | | ||||| ||||||||||||||    
T  16123320 aaaagaagtaacttttcattgaaaacaaacaattgttgattaaatgttacatatttaatataaaaaacacaagttcctaatcaaaattactaatttaaac 16123419  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||||||||    
T  16123420 ttcttatcatgtgcaaatttgcaca 16123444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 13351336 - 13351226
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatg 129  Q
    |||||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||    
T  13351336 ttttttattgaaaatcaacaattattaattaaaagttacatattaaatataaaaaacacaagttctaagtcaaagttactactttaaacttcttaacatg 13351237  T
Q  130 tataaatttgc 140  Q
    |  ||||||||    
T  13351236 tgcaaatttgc 13351226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 39904184 - 39904074
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||| ||||| ||| |||||| |||||||    
T  39904184 aaaagtagtaacttttcattgaaaatcaacaattattgattaaaagctacatgtttaatataaaaaacataagttccaagttaaatttactactttaaac 39904085  T
Q  119 ttcttaacatg 129  Q
    |||||||||||    
T  39904084 ttcttaacatg 39904074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 15411759 - 15411634
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||  | ||||||||||||||||||   | |||||||||| ||||||||||| ||||||    
T  15411759 aaaagtagtaattttttattgaaaaacaacaataatttattaaaaagctacatatttaatataaaatgaacaagtttcaagacaaagttactattttaaa 15411660  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  15411659 cttcttaacatgtgcaaatttgcaca 15411634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 10690824 - 10690916
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaa 111  Q
    |||| ||||||||||| ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||| |||||||    
T  10690824 aaaattagtaatttttcattaaaaaccaacaattattgattaaaagctacatatttaatataaaaaacataagtttcaaattaaaattactaa 10690916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 2060179 - 2060054
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||| ||| |||| ||| |||| ||||||||||| ||||||  | |||||||||||||||||| ||| || || ||||| |||||||||| ||||||    
T  2060179 aaaagtaataacttttcattaaaaatcaacaattatttattaaagagctacatatttaatataaaagacacaaattccaagttaaagttactactttaaa 2060080  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     |||||||||||| ||||||||||||    
T  2060079 tttcttaacatgtgtaaatttgcaca 2060054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 15231883 - 15231997
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacat 128  Q
    |||||||||||||| ||| | ||||| ||||||  |||||||||||||||| |||  || |||||| ||||||||||||| | |||||||||||||||||    
T  15231883 ttttttattgaaaaacaaaacttatttattaaaaagttacatatttaatatgaaatgcacaagttttaagtcaaagttaccactttaaacttcttaacat 15231982  T
Q  129 gtataaatttgcaca 143  Q
    ||  |||||||||||    
T  15231983 gtgcaaatttgcaca 15231997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 9747358 - 9747483
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| | ||||||||||| |||||| ||||  | |||  | ||||||||||||||||||   | ||||| |||| |||| |||||| ||||||    
T  9747358 aaaagtagtaactatttattgaaaaacaacaactatttgtaaaaaagctacatatttaatataaaatgaacaagttccaagacaaaattactattttaaa 9747457  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  9747458 cttcttaacatgtgaaaatttgcaca 9747483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 37471866 - 37471765
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacat 128  Q
    |||||||||||||  ||||||| ||| ||||||    ||||||||||||||||||   | |||||||||| ||||||||||| |||||||||||||||||    
T  37471866 ttttttattgaaagacaacaataatttattaaaaaactacatatttaatataaaatgaacaagtttcaagacaaagttactattttaaacttcttaacat 37471767  T
Q  129 gt 130  Q
    ||    
T  37471766 gt 37471765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 40562214 - 40562102
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||  |||| ||||| |||| |||| | | |||||||||  |||||||| || ||||||    
T  40562214 aaaagcagtaagtttttattgaaaatcaacaattatttattaaagagttatatattaaatacaaaatataaaagtttcaatgcaaagttaatattttaaa 40562115  T
Q  118 cttcttaacatgt 130  Q
    ||| |||||||||    
T  40562114 ctttttaacatgt 40562102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 143
Target Start/End: Complemental strand, 20566140 - 20566029
Alignment:
Q  33 tttattgaaaaccaacaattattgattaaa-tgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgta 131  Q
    ||||||||||| ||||||||||| |||||| | |||  ||||||||| |||| ||| ||||| |||  ||||  || || |||||||||||||||||||     
T  20566140 tttattgaaaaacaacaattatttattaaaatattatctatttaataaaaaatacacaagttccaatacaaacataatactttaaacttcttaacatgtg 20566041  T
Q  132 taaatttgcaca 143  Q
    ||||||||||||    
T  20566040 taaatttgcaca 20566029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 12919439 - 12919362
Alignment:
Q  66 tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||||||   | ||||||||||  |||||||||| |||||| || ||||||||| ||||||||||||    
T  12919439 tacatatttaatataaaatgaacaagtttcaagataaagttactattttaaattttttaacatgtgtaaatttgcaca 12919362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 45062239 - 45062364
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||| |||| |||||||| |||| ||| ||||||| ||||||  ||||||| ||||||||||||  || ||||| |||   |||||||||| ||| ||    
T  45062239 aaaagtggtaactttttattaaaaaacaaaaattatttattaaaaagttacatgtttaatataaaatgcacaagttccaaaataaagttactattttgaa 45062338  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||| ||||  |||||||||||    
T  45062339 cttcttaatatgtgcaaatttgcaca 45062364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 125
Target Start/End: Original strand, 2051667 - 2051763
Alignment:
Q  31 tttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaattt-aaacttcttaa 125  Q
    ||||||||||||| ||||||||||| ||| |||  ||| ||||||||||||||| | |||||| ||||  || |||||||| ||| |||||||||||    
T  2051667 tttttattgaaaaacaacaattatttattaaaaatttaaatatttaatataaaatatataagtatcaatgcatagttactattttaaaacttcttaa 2051763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 7757841 - 7757798
Alignment:
Q  100 caaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||    
T  7757841 caaagttactattttaaatttcttaacatgtgtaaatttgcaca 7757798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 43388903 - 43388860
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaa 62  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||    
T  43388903 aaaagtagaaattttttattgaaaatcaacaattatttattaaa 43388860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 41492220 - 41492158
Alignment:
Q  68 catatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    ||||||||||| ||||  || ||||||||||| ||||||| || ||||||||||||| |||||    
T  41492220 catatttaataaaaaatgcacaagtttcaagttaaagttattactttaaacttcttatcatgt 41492158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 24729714 - 24729589
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||||||||||||  || ||||||| ||||||  ||||  || |||||| |||| | | || || |||  ||||||||||| ||||||    
T  24729714 aaaaatagtaaatttttattgaaaataaataattatttattaaaaagttatgtaattaatacaaaatatacaaattccaatgcaaagttactattttaaa 24729615  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     ||||||||||||  |||||||||||    
T  24729614 tttcttaacatgtgcaaatttgcaca 24729589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 34214088 - 34214052
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattatt 55  Q
    |||| |||||| |||||||||||||||||||||||||    
T  34214088 aaaaatagtaagtttttattgaaaaccaacaattatt 34214052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 52915 - 52791
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  52915 aaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaac 52816  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  52815 ttcttaacatgtgcaaatttgcaca 52791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 145719 - 145843
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||||||||| |||||||    
T  145719 aaaagtagtaacttttcattgaaaaccaacaattattgattaaaagttacatatttaatacaaaaaacacaagttccaagtcaaagttactactttaaac 145818  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  145819 ttcttaacatgtgcaaatttgcaca 145843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 6e-43; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 313791 - 313915
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||| |||||||    
T  313791 aaaagtagtaatttttgattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaac 313890  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  313891 ttcttaacatgtgcaaatttgcaca 313915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 44918066 - 44918190
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| ||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| ||| | |||||||||| ||||||     
T  44918066 aaaagtagtaaatttttattgaaaatcaacaattattgattaaaagctacatatttaatataaaaaacataagttccaaattaaagttactactttaaat 44918165  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||||||||| ||||||||||||    
T  44918166 ttcttaacatgtgtaaatttgcaca 44918190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 30288995 - 30288876
Alignment:
Q  24 tagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    ||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| ||| |||||| ||||||||||||    
T  30288995 tagtaatttttcattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaaattactactttaaacttctt 30288896  T
Q  124 aacatgtataaatttgcaca 143  Q
    ||||||| ||||||||||||    
T  30288895 aacatgtgtaaatttgcaca 30288876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 39150463 - 39150339
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| || || |||||||||||||||| |||||||    
T  39150463 aaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaaattccaagtcaaagttactactttaaac 39150364  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||||||||    
T  39150363 ttcttatcatgtgcaaatttgcaca 39150339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 6570120 - 6569997
Alignment:
Q  20 aaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaact 119  Q
    |||||| ||| |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||| ||||| |||||||||| ||||||||    
T  6570120 aaagtactaacttttcattgaaaaccaacaattattgattaaaagctacatatttaatataaaaaacacaagttccaagttaaagttactactttaaact 6570021  T
Q  120 tcttaacatgtataaatttgcaca 143  Q
    |||||||||||  |||||||||||    
T  6570020 tcttaacatgtgcaaatttgcaca 6569997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 17919495 - 17919619
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||||| || || |||||||||||||||| |||||||    
T  17919495 aaaagtagtaacttttcattgaaaaccaacaattatttattaaaagttacatatttaatataaaaaacacaaattccaagtcaaagttactactttaaac 17919594  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||  ||||  |||||||||||    
T  17919595 ttcttattatgtgcaaatttgcaca 17919619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 147
Target Start/End: Original strand, 8062246 - 8062374
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    ||||||||||| |||| |||||||| ||||||||||||||||||   || |||||||||||||||||||||| |||||| | |||||||||| |||||||    
T  8062246 aaaagtagtaacttttcattgaaaatcaacaattattgattaaaaactatatatttaatataaaaaacataaatttcaaattaaagttactactttaaac 8062345  T
Q  119 ttcttaacatgtataaatttgcacaaaaa 147  Q
    || |||||||||  |||||||||||||||    
T  8062346 tttttaacatgtgcaaatttgcacaaaaa 8062374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 39930937 - 39930813
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||| || ||||||| ||||||   ||||||| |||||||||||| | ||||||||||| |||||||||| |||||||    
T  39930937 aaaagtagtaatttttcattgaaaacaaataattatttattaaaaactacatatataatataaaaaatacaagtttcaagttaaagttactactttaaac 39930838  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    |||||| |||||  |||||||||||    
T  39930837 ttcttatcatgtgcaaatttgcaca 39930813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 32716281 - 32716195
Alignment:
Q  37 ttgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||| |||||| ||||||||||||    
T  32716281 ttgaaaacaaacaattattgattaaatgttacatatttaatataaaaaacacaagttcctaatcaaaattactactttaaacttctt 32716195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 30171920 - 30172045
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||  | |||||||||||||| |||  || ||||| |||||||||||||| | ||||||    
T  30171920 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaagttaccactttaaa 30172019  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  30172020 cttcttaacatgtgcaaatttgcaca 30172045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 30187461 - 30187586
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||  | |||||||||||||| |||  || ||||| |||||||||||||| | ||||||    
T  30187461 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaagttaccactttaaa 30187560  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  30187561 cttcttaacatgtgcaaatttgcaca 30187586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 52833602 - 52833497
Alignment:
Q  25 agtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctta 124  Q
    |||||||||| ||||||||| |||||||||| |||||| | |||||||||| |||||||| || || |||||||||||| |||||| |||||||||||||    
T  52833602 agtaatttttcattgaaaacaaacaattatttattaaaagctacatatttattataaaaatcacaaatttcaagtcaaaattactattttaaacttctta 52833503  T
Q  125 acatgt 130  Q
     |||||    
T  52833502 tcatgt 52833497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 6754513 - 6754637
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||||||||||| |||||||||| | ||||||  | |||||| |||||||||||  || ||||| |||||||||||||||| ||||||    
T  6754513 aaaaatagtaactttttattgaaa-ccaacaattaattattaaaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaa 6754611  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| |||||  |||||||||||    
T  6754612 cttcttatcatgtgcaaatttgcaca 6754637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 30363132 - 30363007
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| ||||||||||||||||||||||| | ||||||    ||||||||||||||||||  || ||||| |||||||||||||||| ||||||    
T  30363132 aaaaatagtaactttttattgaaaaccaacaattaattattaaaaacctacatatttaatataaaatgcacaagttccaagtcaaagttactattttaaa 30363033  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     || ||| |||||  |||||||||||    
T  30363032 tttgttatcatgtgcaaatttgcaca 30363007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 140
Target Start/End: Original strand, 36490820 - 36490942
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| ||||||||||||| ||||||||||| ||| ||| |||| ||||| |||| ||||   | ||||| |||  ||||||||||| ||||||    
T  36490820 aaaagtagtaagtttttattgaaaaacaacaattatttattaaaaagttatatattaaatacaaaatgtacaagttccaatgcaaagttactattttaaa 36490919  T
Q  118 cttcttaacatgtataaatttgc 140  Q
    |||||||||||||  ||||||||    
T  36490920 cttcttaacatgtgcaaatttgc 36490942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 41624871 - 41624995
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| |||||||||||| |||||||||| | ||||||  | |||||| |||||||||||  || ||||| |||||||||||||||| ||||||    
T  41624871 aaaaatagtaactttttattgaaa-ccaacaattaattattaaaaatctacataattaatataaaatgcacaagttccaagtcaaagttactactttaaa 41624969  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||| ||| |  |||||||||||    
T  41624970 cttcttatcatatgcaaatttgcaca 41624995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 21854254 - 21854142
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||| |||||||| ||||| ||||| ||| ||| | ||| ||||||||||||||   | ||||| |||||||||||||| | ||||||    
T  21854254 aaaagtagtaatttttaattgaaaaacaacatttatttatttaaaagatacctatttaatataaaatgtacaagttccaagtcaaagttaccactttaaa 21854155  T
Q  118 cttcttaacatgt 130  Q
    ||| |||||||||    
T  21854154 ctttttaacatgt 21854142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 12947639 - 12947566
Alignment:
Q  70 tatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||  || |||||| ||||||||||||||||||||||||||||| ||| | |||||| |||||    
T  12947639 tatttaatataaaatgcacaagttttaagtcaaagttactaatttaaacttcttaccatatgtaaattcgcaca 12947566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 10896446 - 10896506
Alignment:
Q  70 tatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    |||||||||||||||||| |||||  |||| |||||||||| |||||||||||||||||||    
T  10896446 tatttaatataaaaaacacaagttcaaagttaaagttactactttaaacttcttaacatgt 10896506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 3096298 - 3096375
Alignment:
Q  66 tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||||||||||||||||||| |||| ||| ||| || |||||| || ||| |||||  |||||||||||    
T  3096298 tacatatttaatataaaaaacataagttttaagttaaaattattactttaaattttttatcatgtgcaaatttgcaca 3096375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 21391985 - 21391920
Alignment:
Q  69 atatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgtataa 134  Q
    |||||| |||||||| ||| |||||  ||| ||||||||||| |||||||||||||||||||||||    
T  21391985 atattttatataaaatacacaagttctaagccaaagttactactttaaacttcttaacatgtataa 21391920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 34802009 - 34802133
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||    |||||||||||||| |||  || ||||| || | |||| |||| | ||||||    
T  34802009 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaaactacatatttaatatgaaatgcacaagttcca-gacaaaattaccattttaaa 34802107  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  34802108 cttcttaacatgtgcaaatttgcaca 34802133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 44007612 - 44007555
Alignment:
Q  73 ttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    ||||||||||||||| ||||| ||||| |||||| ||| |||||||||||||||||||    
T  44007612 ttaatataaaaaacacaagttccaagttaaagttgctactttaaacttcttaacatgt 44007555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 31101069 - 31100958
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||||||||||||||  |||||||| ||||| ||||| ||||||  |  |||||||||||||||||  || |||||| ||||||||||||| | ||||||    
T  31101069 aaaagtagtaattttc-attgaaaaacaacacttatttattaaaaagcaacatatttaatataaaatgcacaagttttaagtcaaagttaccactttaaa 31100971  T
Q  118 cttcttaacatgt 130  Q
     ||||||| ||||    
T  31100970 tttcttaatatgt 31100958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 43671742 - 43671795
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaa 83  Q
    ||||||||| |||| ||||||||||| |||||| |||| |||||||||||||||    
T  43671742 ttttttatttaaaatcaacaattatttattaaaagttatatatttaatataaaa 43671795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 52337858 - 52337919
Alignment:
Q  69 atatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatgt 130  Q
    ||||||||||||||| ||||||||| |||  || | |||||| |||||||||||||||||||    
T  52337858 atatttaatataaaatacataagttgcaatgcatatttactattttaaacttcttaacatgt 52337919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 141
Target Start/End: Original strand, 5057043 - 5057166
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||| |||||| |||| ||| | | ||| ||||||  | || |||||||||||||||   | |||||||||||||||||||| | ||||||    
T  5057043 aaaagtagtaattatttatttaaaaacaatattaatttattaaaaagatatatatttaatataaaatgtacaagtttcaagtcaaagttaccactttaaa 5057142  T
Q  118 cttcttaacatgtataaatttgca 141  Q
    ||| | ||||| |  |||||||||    
T  5057143 cttttgaacatttgcaaatttgca 5057166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 143
Target Start/End: Original strand, 9516628 - 9516747
Alignment:
Q  25 agtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttctt 123  Q
    ||||| |||| |||||||| || |||||||| ||||||  |||| ||||||||||||||| ||| |||||  |||  ||| |||| | |||||| |||||    
T  9516628 agtaacttttcattgaaaaacaccaattatttattaaaaagttatatatttaatataaaatacacaagttataagagaaacttaccattttaaatttctt 9516727  T
Q  124 aacatgtataaatttgcaca 143  Q
    |||||||  |||||| ||||    
T  9516728 aacatgtgcaaatttacaca 9516747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 23576480 - 23576426
Alignment:
Q  89 aagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||  ||||||||||| |||||| ||||||||||||  |||||||||||    
T  23576480 aagtttcaatgcaaagttactattttaaatttcttaacatgtgcaaatttgcaca 23576426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 23591739 - 23591864
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgatt-aaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    |||| |||||| ||||||||||||| ||| ||||||| ||| ||| |||| |||||||||| ||||   | ||||| |||  |||||||  || || |||    
T  23591739 aaaattagtaagtttttattgaaaatcaataattatttattaaaaagttatatatttaatacaaaatgtacaagttccaatgcaaagttgttatttaaaa 23591838  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
     ||||||||||||  |||||||||||    
T  23591839 tttcttaacatgtgcaaatttgcaca 23591864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 19277832 - 19277872
Alignment:
Q  22 agtagtaattttttattgaaaaccaacaattattgattaaa 62  Q
    |||||||| ||||||||||||| ||||||||||| ||||||    
T  19277832 agtagtaagtttttattgaaaaacaacaattatttattaaa 19277872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 51382413 - 51382449
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattatt 55  Q
    ||||||||||| |||| ||||||||||||||||||||    
T  51382413 aaaagtagtaacttttcattgaaaaccaacaattatt 51382449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 182084 - 182208
Alignment:
Q  18 caaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||| |||| | ||||| ||||||    
T  182084 caaaagtagtaattttttattgaaaacaaacaattatttattaaaagttacatatttaatataaaaaacacaagtttcaaatcaacg-tactactttaaa 182182  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||| |||||| ||||    
T  182183 cttcttaacatgtacaaatttacaca 182208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 13127 - 13251
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaac 118  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| | |||||||||||||||||||||| || || ||| | |||||||||| |||||||    
T  13127 aaaagtagtaatttttcattgaaaaccaacaattgttgattaaaagctacatatttaatataaaaaacacaaattccaaattaaagttactattttaaac 13226  T
Q  119 ttcttaacatgtataaatttgcaca 143  Q
    ||||||||||||  |||||||||||    
T  13227 ttcttaacatgtgcaaatttgcaca 13251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 3550 - 3425
Alignment:
Q  19 aaaagtagtaatttttt-attgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| | ||||| |||| ||||||    
T  3550 aaaagtagtaactttttcattaaaaaccaacaattattgattaaaagttacatatttaatataaaaaacataagttccaatttaaagtaactactttaaa 3451  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||| ||||  |||||| ||||    
T  3450 cttcttaatatgtgcaaatttacaca 3425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 143
Target Start/End: Original strand, 5744 - 5857
Alignment:
Q  30 ttttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaacttcttaacatg 129  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||| | || ||| |||| |||||||||| ||||||||| ||||||||    
T  5744 ttttttattgaaaaccaacaattattgattaaaaactacatatttaatataaaaaatacaaattttaagttaaagttactactttaaactttttaacatg 5843  T
Q  130 tataaatttgcaca 143  Q
    |  |||||||||||    
T  5844 tgcaaatttgcaca 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 43504 - 43630
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgttacatatttaatataaaaaacataagtttcaagtcaaagttactaattt--aa 116  Q
    |||||||||||||||| |||||||| ||||||||||| |||||| |||| ||||||||||||||||| |||||||| |||| ||||||| |  |||  ||    
T  43504 aaaagtagtaatttttcattgaaaatcaacaattattaattaaaagttatatatttaatataaaaaatataagttttaagttaaagttattgctttaaaa 43603  T
Q  117 acttcttaacatgtataaatttgcaca 143  Q
    |||||||||||| |  |||||||||||    
T  43604 acttcttaacatattcaaatttgcaca 43630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 37251 - 37126
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaat-gttacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||||||||||||||||| ||| | ||||| ||||||  | |||||||||||||| |||  || ||||| |||||||||||||  | ||||||    
T  37251 aaaagtagtaattttttattgaaaaacaaaacttatttattaaaaagctacatatttaatatgaaatgcacaagttccaagtcaaagttatcactttaaa 37152  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    |||||||||||||  |||||||||||    
T  37151 cttcttaacatgtgcaaatttgcaca 37126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 8550 - 8441
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||| |||||||||||||||||| |||||||||| ||||||    |||| |||||||||||||  || |||||  || |||||||||||| ||||||    
T  8550 aaaagtattaattttttattgaaaac-aacaattatttattaaaaaactacaaatttaatataaaatgcacaagttctaaatcaaagttactactttaaa 8452  T
Q  118 cttcttaacat 128  Q
     ||||||||||    
T  8451 tttcttaacat 8441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 13629 - 13575
Alignment:
Q  89 aagtttcaagtcaaagttactaatttaaacttcttaacatgtataaatttgcaca 143  Q
    |||||||||  |||| ||||||||||||||||||||||||||  |||||||||||    
T  13629 aagtttcaatgcaaacttactaatttaaacttcttaacatgtgcaaatttgcaca 13575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 94155 - 94030
Alignment:
Q  19 aaaagtagtaattttttattgaaaaccaacaattattgattaaatgt-tacatatttaatataaaaaacataagtttcaagtcaaagttactaatttaaa 117  Q
    ||||||||||| |||||||||||||| || ||||||| ||||||    || |||||||||| ||||   ||||||| |||   ||||||| || || |||    
T  94155 aaaagtagtaagtttttattgaaaactaataattatttattaaaaaactatatatttaatacaaaatgtataagttccaatgtaaagttagtatttaaaa 94056  T
Q  118 cttcttaacatgtataaatttgcaca 143  Q
    ||||||||||| |  |||||||||||    
T  94055 cttcttaacatatgcaaatttgcaca 94030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University