View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21278_high_6 (Length: 249)
Name: NF21278_high_6
Description: NF21278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21278_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 246
Target Start/End: Original strand, 46679888 - 46680123
Alignment:
| Q |
11 |
cacagaaaatttaaattcgagaatgcatggttggtggaacacggatttaaaaaagaaagaaacctaagcagagttcctattgtaacaacaaatgacaaat |
110 |
Q |
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| T |
46679888 |
cacagaaaatttaaattcgagaatgcatggttggtggaacacggatttaaaaaagaaagaaacctaagcagagttcctattgtaacaacaaatgacaaat |
46679987 |
T |
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| Q |
111 |
aaaattgtccaaattctaatgttgagttcctgccaccactgtaactaggagataattcaacttcaatttcatatttaggattacaattggatatactttt |
210 |
Q |
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| T |
46679988 |
aaaattgtccatattctaatgtcgagttcctgccaccactgtaactaggagataattcaacttcaatttcctatttaggattacaattggatatactctt |
46680087 |
T |
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| Q |
211 |
gtcaataatacaagtattgatactggtaattgatga |
246 |
Q |
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| T |
46680088 |
gtcaataatacaagtattgatgctagtaattgatga |
46680123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 46702281 - 46702396
Alignment:
| Q |
64 |
agaaagaaacctaagcagagttcctattgtaacaacaaatgacaaataaaattgtccaaattctaatgttgagttcctgccaccactgtaactaggagat |
163 |
Q |
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|||||||||||| |||| || |||||||||||||| | || || |||||||||| ||| |||||| |||||||||||||||||| | |||||||| |
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| T |
46702281 |
agaaagaaacctgagcatagctcctattgtaacaaaa---gaaaaccaaaattgtcctcattttaatgtcgagttcctgccaccactgcgagtaggagat |
46702377 |
T |
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| Q |
164 |
aattcaacttcaatttcat |
182 |
Q |
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| T |
46702378 |
aattcaacttcaatttcat |
46702396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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