View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21278_low_1 (Length: 463)
Name: NF21278_low_1
Description: NF21278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21278_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 32291743 - 32291300
Alignment:
| Q |
1 |
ataaatgaccta--gacactcagtatcatttttctttatttaaaaagttgatattattattaattacccagtgtttcttaggatgcttccaattacatgg |
98 |
Q |
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|||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32291743 |
ataaatgacctaaagacactcagtatcagttttctta--ttaaaaagttgatattattattaattaca-agtgtttcttaggatgcttccaattacatgg |
32291647 |
T |
|
| Q |
99 |
tggtgaaaaacacgtacctgatgataatgacacatcaaaatcaaacaaccaaaaaacgtgttgtgaattgcaatgaacaggcaacacagtaagcaagcaa |
198 |
Q |
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| T |
32291646 |
tggtgaaaaacacgtacctgatgataatgacacatcaaaatcaaaaaaccaaaaa-cgtgttgtgaattgcaatgaacaggcaacacagtaagcaagcaa |
32291548 |
T |
|
| Q |
199 |
gcataacagtagtagcaccatttccatacatcgaagaaatgaaattaaagcgtgcatgtgttgtgtgcgtggaaacaagtttgtgtatattcatctg-ca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
32291547 |
gcataacagtagtagcaccatttccatacatcgaagaaatgaaattaaagcgtgcatgtgttgtgtgcgtggaaacaagtttgtgtatattcatctgcca |
32291448 |
T |
|
| Q |
298 |
caagttttgcttttatttgctgttttggaataaagtaaccgacatacaccaccactacacaacaatcaatgctgtca-cccatagttctaatctaagtat |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
32291447 |
caagttttgcttttatttgctgttttggaataaagtaaccgacatacaccaccactacacaacaatcaatgctgtcaccccatagttctaatctaagtat |
32291348 |
T |
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| Q |
397 |
gacttcagaaccaacaaatcccccaatccgagcgtcacatatattcat |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32291347 |
gacttcagaaccaacaaatcccccaatccgagcgtcacatatattcat |
32291300 |
T |
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