View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21278_low_2 (Length: 432)
Name: NF21278_low_2
Description: NF21278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21278_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 414
Target Start/End: Original strand, 25217231 - 25217633
Alignment:
| Q |
11 |
cacagaagcattcaatttctttgacaagaataagagtggatatgttgagtttgatgagttgaaagatgccttatcagataatggttcgaccgatgaccaa |
110 |
Q |
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| T |
25217231 |
cacagaagcattcaatttctttgacaagaataagagtggatatgttgagtttgatgagttgaaagatgccttatcagataatggttcgaccgatgaccaa |
25217330 |
T |
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| Q |
111 |
gtgatcagagacattctcaacgatgtcgacttggataaggtaagatagatgttagaagtcggttataaatcggttatattagttagaaatcggttataat |
210 |
Q |
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| T |
25217331 |
gtgatcagagacattctcaacgatgtcgacttggataaggtaagatatatgttagaagtcggttataaatcg-ttatattagttagaaatcggttataat |
25217429 |
T |
|
| Q |
211 |
gttttgttttgttataggatggtcgagtaagttttgaggaatttaaggcaatgatgaagacaggaggagattggaaaatggcatcaagacaatattcaaa |
310 |
Q |
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| T |
25217430 |
gttttgttttgttataggatggtcgagtaagttttgaggaatttaaggcaatgatgaagacaggaggagattggaaaatggcatcaagacaatattcaaa |
25217529 |
T |
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| Q |
311 |
agcatttctaaatgcattaagcttcagaatgtttaaagacaaatctacgggagtagcaactaactaaactaaattaactgattttctataaagcagatta |
410 |
Q |
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| T |
25217530 |
agcatttctaaatgcattaagcttcagaatgtttaaagacaaatctacgggagtagcaactaactaaactaaattaactgaatttctataaagcagatta |
25217629 |
T |
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| Q |
411 |
ctgt |
414 |
Q |
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| T |
25217630 |
ctgt |
25217633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 214 - 396
Target Start/End: Complemental strand, 1969696 - 1969514
Alignment:
| Q |
214 |
ttgttttgttataggatggtcgagtaagttttgaggaatttaaggcaatgatgaagacaggaggagattggaaaatggcatcaagacaatattcaaaagc |
313 |
Q |
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| T |
1969696 |
ttgttttgttaaagaatggtcgagtaagttttgaggaatttaaggcaatgatgaagacagaaggagattggaaaatggcatctagacaatattcaaaagc |
1969597 |
T |
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| Q |
314 |
atttctaaatgcattaagcttcagaatgtttaaagacaaatctacgggagtagcaactaactaaactaaattaactgattttc |
396 |
Q |
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| T |
1969596 |
atttctaaatgcattaagcttcataatgtttaaagacaaatctacgggagtagcaactaactaaactaaattaactgaatttc |
1969514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 1969926 - 1969782
Alignment:
| Q |
11 |
cacagaagcattcaatttctttgacaagaataagagtggatatgttgagtttgatgagttgaaagatgccttatcagataatggttcgaccgatgaccaa |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||||||||||||| |
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| T |
1969926 |
cacagaagcattcaatttctttgacaagaataagagtggatatgttgagtttgatgaattgaaagattccctatcagatgatggttcgaccgatgaccaa |
1969827 |
T |
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| Q |
111 |
gtgatcagagacattctcaacgatgtcgacttggataaggtaaga |
155 |
Q |
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||||| ||||||||||||||| |||| |||||||||||||||||| |
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| T |
1969826 |
gtgataagagacattctcaactatgtagacttggataaggtaaga |
1969782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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