View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21278_low_3 (Length: 399)
Name: NF21278_low_3
Description: NF21278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21278_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 382
Target Start/End: Original strand, 4645562 - 4645931
Alignment:
| Q |
13 |
aatatcaaatccagttcccaatgattttttctcttttctatggttttgtatttgtaggttgttacacaatcaaaataaacaataacaaaattttctgaac |
112 |
Q |
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| T |
4645562 |
aatatcaaatccagttcccaatgattttttctcttttctatggttttgtatttgtaggttgttacacaatcaaaataaacaataacaaaattttctgaac |
4645661 |
T |
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| Q |
113 |
agaataagagatgacgcaatttattataattaacnnnnnnngagaaaatacaagatagctagcttggaatgaatttcatcatatcataggaattatattg |
212 |
Q |
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| T |
4645662 |
agaataagacatgacgcaatttattataattaactttatttgagaaaatacaagatagctagcttggaatgaatttcatcatatcataggaattatattg |
4645761 |
T |
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| Q |
213 |
catatagaataaaagatcattaattaagcatagaaagtggttaattaggcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtgttgg |
312 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4645762 |
catatagaataaaagatcattaattaagcacagaaagtggttaattaggcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtattgg |
4645861 |
T |
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| Q |
313 |
ttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttctt |
382 |
Q |
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| T |
4645862 |
ttccaagaatatcactccattgatctccaatgtttccaacaattctgtatccttcttcctccaatttctt |
4645931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 261 - 370
Target Start/End: Original strand, 4650104 - 4650213
Alignment:
| Q |
261 |
gcaatgtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgt |
360 |
Q |
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| T |
4650104 |
gcaatgtagtaaagaggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactgtttccaataattctcc |
4650203 |
T |
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| Q |
361 |
atccttcttc |
370 |
Q |
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| T |
4650204 |
atccttcttc |
4650213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 266 - 370
Target Start/End: Complemental strand, 23682147 - 23682043
Alignment:
| Q |
266 |
gtagtagaggggatcagggagcttgaaagtcctttcaccagtgttggttccaagaatatcactccattgatctccaatgtttccaacaattctgtatcct |
365 |
Q |
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|||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||| ||||| |
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| T |
23682147 |
gtagtaaagaggatcagggagtttgaaagtcctttcaccagtgttggttccaagaatatcactccattggtctccactatttccaataattctccatcct |
23682048 |
T |
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| Q |
366 |
tcttc |
370 |
Q |
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||||| |
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| T |
23682047 |
tcttc |
23682043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 23702803 - 23702720
Alignment:
| Q |
41 |
ttctcttttctatggttttgtatttgtaggttgttacacaatcaaaataaac-aataacaa--aattttctgaacagaataaga |
121 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||||||| |
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| T |
23702803 |
ttctcttttctatggttttgtatttgtaggttataacacaatcaaaataaacaaacaacaaccaattttctgaacagaataaga |
23702720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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