View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21278_low_4 (Length: 361)
Name: NF21278_low_4
Description: NF21278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21278_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 328
Target Start/End: Original strand, 40295118 - 40295430
Alignment:
| Q |
18 |
ctaatatcttcattcatatgttatgatgatatataggaagaaactataaattccaaatatgtgaaggnnnnnnnnnn----ctaattttgaaagttcaat |
113 |
Q |
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| T |
40295118 |
ctaatatcttcattcatatgttatgatgatatacaggaagaaactataaattccaaatatgtgaaggaaaaaaaaaaaaaactaattttgaaagttcaat |
40295217 |
T |
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| Q |
114 |
cactgaattggcaagttttacaatatctaaatcctttaggtataggact-cactcgtatatcccaaatgtcgtgattttctccatcaaagataaagaagc |
212 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40295218 |
cactgaattggcaagtttcacaatatctaaatcctttaggtataggacttcactcgtatatcccaaatgtcgtgattttctccatcaaagataaagaagc |
40295317 |
T |
|
| Q |
213 |
agcttgtgaattattattgttgatgcttgaattttgacatcattctatcatcatgatgtatattaacaatattcacttcgtaactttcctattgaaattt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
40295318 |
agcttgtgaattattattgttgatgcttgaattttgacatcattctatcatcatgatgtatattaacaa---tcacttcctaactttcctattgaaattt |
40295414 |
T |
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| Q |
313 |
cacttctcacggataa |
328 |
Q |
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|||||||||||||||| |
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| T |
40295415 |
cacttctcacggataa |
40295430 |
T |
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