View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_13 (Length: 497)
Name: NF21279_high_13
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 79 - 482
Target Start/End: Original strand, 16761443 - 16761846
Alignment:
| Q |
79 |
cacaaatattttctaaacacatgaattttcgtaaggcaaacgaaaaaacttccattttctctctttcccctcttcatctnnnnnnnnnnnnnnnnnnnnn |
178 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16761443 |
cacaaatattttctaaacacatgaattttcgtaaggcaaacgaaaaaacttccattttctctctttcccctcttcatctacacaacacacatacacaaca |
16761542 |
T |
|
| Q |
179 |
ncataaccatcatcgtcgattcacccaaatccttcctcctcctcctactccaaaatcctccgtcacaatcaccgccgtaaccgtctcatctcagctacca |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16761543 |
ccataaccatcatcgtcgattcacccaaatccttcctcctcctcctactccaaaatcctccgtcacaatcaccgccgtaaccgtctcatctcagctacca |
16761642 |
T |
|
| Q |
279 |
tcgccgccacataaacattcaaaatctccctcgctccttacaaaatccaaacacattcgcgccttttcatttcaccgctattctcgctcgccggcgattc |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16761643 |
tcgccgccacataaacattcaaaatctccctcgctccttacaaaatccaaacacattcgcgccttttcatttcaccgctattctcgctcgccggcgattc |
16761742 |
T |
|
| Q |
379 |
cgtttcaaacgattcatcgccggaaaaattcagctcgatcgtaaacttctctcttccatttatcgtacagttttccgaattgaacgaacacttcgtgtgt |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16761743 |
cgtttcaaacgattcatcgccggaaaaattcagctcgatcgtaaacttctctcttccatttatcgtacagttttccgaattgaacgaacacttcgtgtgt |
16761842 |
T |
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| Q |
479 |
tgaa |
482 |
Q |
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|||| |
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| T |
16761843 |
tgaa |
16761846 |
T |
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