View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_20 (Length: 448)
Name: NF21279_high_20
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 27884566 - 27884141
Alignment:
| Q |
6 |
aagaatatgatattatgaataaatgttatgtttacaaaa-tgagtgctagttcttttttaaggaaagaatgagggaatagattannnnnnnnnnnnctta |
104 |
Q |
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| T |
27884566 |
aagaaaatgatattatgaatatatgatatgtttacaaaaatgagggctagtt-ttttttaaggaaagaatgagggaatagattattttttatttctctta |
27884468 |
T |
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| Q |
105 |
aggaaaatgaggaagtagatgaatgtgaatgatttggaaactatctttgaccatgaaaatgagagggtatgtgttaaaactaacagctttgactttggaa |
204 |
Q |
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| T |
27884467 |
aggaaaatgaggaagtagatgaatgtgaatgatttggaaactgtctttgaccatgaaaatgagagggtatgtgttaaaactaacagctttgactttggaa |
27884368 |
T |
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| Q |
205 |
agcctaggagctttt-atatgctccaacttaacgaacttttcaagtgaatagtatctttatccaatcaaaaaagaaactgagttgtatctttagattact |
303 |
Q |
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| T |
27884367 |
agcctaggagctttttatatgctccaacttaacgaacttttcaagtgaatagtatctttatccaatcaaaaaagaaactgagttgtatctttagattact |
27884268 |
T |
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| Q |
304 |
agtcaagaaattatgagattttttatttgaccgacaagaaattaatagatagtataaatattttgttgaataattgggtctcacgtatttatttatttgt |
403 |
Q |
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| T |
27884267 |
agtcaagaaattatgagattttttatttgaccaacaagaaattaagagatagtataaatattttgttgaataattgggcctcacgtatttatttatttgt |
27884168 |
T |
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| Q |
404 |
ttatttacgaaaagtgtatgtactatc |
430 |
Q |
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| T |
27884167 |
ttatttacgaaaagtgtatgtactatc |
27884141 |
T |
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