View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_21 (Length: 443)
Name: NF21279_high_21
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 288
Target Start/End: Original strand, 34078820 - 34079088
Alignment:
| Q |
19 |
tttctaagatcaatcacttcatatgaagaaagcaaatttgttttctccaagcacaccttttatttccaattattctgaaatgagttttgcaaccattgga |
118 |
Q |
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| T |
34078820 |
tttctaagatcaatcacttcatatgaagaaagcaaatttgttttctccaagcacaccttttatttccaattattctgaaatgagttttgcaaccattgga |
34078919 |
T |
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| Q |
119 |
ttgaatgcatgacttgttttcatttatgattaaaccctttataaatatagcatgtttaannnnnnnnnnnngataaaatatatagcatgtttaagactta |
218 |
Q |
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| T |
34078920 |
ttgaattcatgacttgttttcatttatgattaaaccctttataaatatagcatgtttaa-ttattttttttgataaaatatatagcatgtttaagactta |
34079018 |
T |
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| Q |
219 |
aggggtgaaagttatttttctttcatacatttgcatatcttaatgggtcacaatctttacgagtacccat |
288 |
Q |
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| T |
34079019 |
aggggtgaaagttatttttctttcatacatttgcatatcttaatgggtcacaatctttacgagtacccat |
34079088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 354 - 432
Target Start/End: Original strand, 34079155 - 34079233
Alignment:
| Q |
354 |
gttagaaactttgtattcttattggtacacctagaagtgggtaggatatcatgcgcatgatgattgttttcaagttcat |
432 |
Q |
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| T |
34079155 |
gttagaaactttgtattcttattggtacacctagaagagggtaggatatcatgcgcatgatgattgttttcaagttcat |
34079233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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