View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_22 (Length: 425)
Name: NF21279_high_22
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 21537840 - 21537447
Alignment:
| Q |
16 |
atccatgttgtgctcaaagacttgatgatgattaatataacccttaaatgcacccttaaaactgaatgacctcacatatgcagcagatatctgaactctt |
115 |
Q |
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| T |
21537840 |
atccatgttgtgctcaaagacttgatgatgattaatataacccttaaacgcacccttaaaactgaatgacctcacatatggagcagatatctgaactctt |
21537741 |
T |
|
| Q |
116 |
gaatgttgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtac |
215 |
Q |
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| T |
21537740 |
gaatgttgatacataattgttagactagaaagtatatcaccggatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtac |
21537641 |
T |
|
| Q |
216 |
taagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatc |
315 |
Q |
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| T |
21537640 |
taagcttcttacattttaagaaaggcatagcataatctttgtcattagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatc |
21537541 |
T |
|
| Q |
316 |
tatagtttctggaagctttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagtgaaaaagt |
409 |
Q |
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| T |
21537540 |
tatagtttctggaagttttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagt |
21537447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 122 - 409
Target Start/End: Complemental strand, 21522013 - 21521726
Alignment:
| Q |
122 |
tgatacataattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagct |
221 |
Q |
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| T |
21522013 |
tgatacatgattgttagactggaaaatgtatcaccagatataacaagtattttgtcatctccaattactttgcaatcgtcgatgactaaagtactaagct |
21521914 |
T |
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| Q |
222 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagt |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
21521913 |
tcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaatagtttgctaactctggaaggtctagagt |
21521814 |
T |
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| Q |
322 |
ttctggaagctttacttcccatccatatgtataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagtgaaaaagt |
409 |
Q |
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| T |
21521813 |
ttctggaagttttacttcacattcacatctataaaatgaaaggtcaagacacttcaaagaatgaagggagaatattgagcgaaaaagt |
21521726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 129 - 333
Target Start/End: Original strand, 20426330 - 20426534
Alignment:
| Q |
129 |
taattgttagactagaaagtgtatcaccagatataacaagtattttgtcatctccacttactttgcaatcgtcgacgactaaagtactaagcttcttaca |
228 |
Q |
| |
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|||| ||||| ||||||||| |||||||||||||| ||| ||||||||||||| ||| |||| ||| || | || ||||||||||| ||||||||| |
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| T |
20426330 |
taatagttaggctagaaagtctatcaccagatatacaaagaattttgtcatctctgattaatttgaaattctcaatgaataaagtactaaacttcttaca |
20426429 |
T |
|
| Q |
229 |
ttttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtcttaaacaacagtttgctaactctggaagatctatagtttctgga |
328 |
Q |
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| T |
20426430 |
ttttaagaaaggcttagcacaaccattgtcatcatctaaagaaattgaaacatttcttagacgacaacttactaactccggaagatatatagtttctaga |
20426529 |
T |
|
| Q |
329 |
agctt |
333 |
Q |
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||||| |
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| T |
20426530 |
agctt |
20426534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 208 - 286
Target Start/End: Complemental strand, 20427630 - 20427552
Alignment:
| Q |
208 |
taaagtactaagcttcttacattttaagaaaggcgtagcataatctttgccatcagccaaagtaaatgtaacatgtctt |
286 |
Q |
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||||||| |||||||||||||||| ||||||||| ||||| || | |||| |||| ||||||||| |||||||| |||| |
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| T |
20427630 |
taaagtattaagcttcttacatttcaagaaaggcttagcacaaccattgctatcatccaaagtaattgtaacatttctt |
20427552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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