View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_23 (Length: 423)
Name: NF21279_high_23
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 409
Target Start/End: Complemental strand, 2382151 - 2381756
Alignment:
| Q |
14 |
aatatcagaaacgcgtaccttataccactaccatcactaggcacatcaaaaccaaataaaccatcctcctcaatatcgcaggcctgcaatgcaatgataa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382151 |
aatatcagaaacgcgtaccttataccactaccatcactatgcacatcaaaaccaaataaaccatcctcctcaatatcgcaggcctgcaatgcaatgataa |
2382052 |
T |
|
| Q |
114 |
tacaaccgaaatcaatttatatctcttcaccataaagaacttctccttgttgaataaaaaataatcagttcgctgttgttcttgagcaataatcatatct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2382051 |
tacaaccgaaatcaatttatatctcttcaccataaagaacttctccttgttgaataaaaaataatcagttcgctgttgttcttgagcaataatcatatct |
2381952 |
T |
|
| Q |
214 |
tgtgaagatataaggacagctatctccgaacttgtatagtattttatttgcagtcgaaaagtttgttcaaaggatgaggacaacagttttttatcatctt |
313 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2381951 |
tgtgaaaatataaggacagctatctccgaacttgtatagtattttatttgcagtcgaaaagtttgttcaaaggatgaggacaacagttttctatcatctt |
2381852 |
T |
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| Q |
314 |
aaattttacaaaagaggctcaatactttgccttaatcttaaacagagaaaagacaaacatggccaacaaactaatagttgcagtcaagaaacaagt |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2381851 |
aaattttacaaaagaggctcaatactttgccttaatcttaaacagagaaaagacaaacatggccaacaaactaatagttgcagtcaagaaacaagt |
2381756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 29 - 393
Target Start/End: Original strand, 45320657 - 45321021
Alignment:
| Q |
29 |
taccttataccactaccatcactaggcacatcaaaaccaaataaaccatcctcctcaatatcgcaggcctgcaatgcaatgataatacaaccgaaatcaa |
128 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||| | || ||||| |
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| T |
45320657 |
taccttacaccactaccatcactatgcacatcaaaaccaaataaaccatcttcctcaatattgcaggcctgcagtgcaatgataataccaatgacatcaa |
45320756 |
T |
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| Q |
129 |
tttatatctcttcaccataaagaacttctccttgttgaataaaaaataatcagttcgctg-ttgttcttgagcaataatcatatcttgtgaagatataag |
227 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||||| | || | | ||| |||||||| ||||||| |
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| T |
45320757 |
tttatatctctacaccgtaaagaacttctccttgttgaataaaaaataatcagttcactaattgttcttacgtaacattaata-cttgtgaaaatataag |
45320855 |
T |
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| Q |
228 |
gacagctatctccgaacttgtatagtattttatttgcagtcgaaaagtttgttcaaaggatgaggacaacagttttttatcatcttaaattttacaaaag |
327 |
Q |
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|||| ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| || || |||| |||| ||||||||||||| |
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| T |
45320856 |
gacatctatctcagaacttgtacagtattttatttgcagtcgaaaagattgttcaaaggattaggacaaaagcttcctatcgtctttaattttacaaaag |
45320955 |
T |
|
| Q |
328 |
aggctcaatactttgccttaatcttaaacagagaaaagacaaacatggccaacaaactaatagttg |
393 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45320956 |
aggctcaatactttgccttcatcttaaacagagaaaagacaaacatggccaacaaactaatagttg |
45321021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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