View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_24 (Length: 418)
Name: NF21279_high_24
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 244
Target Start/End: Complemental strand, 35224808 - 35224575
Alignment:
| Q |
11 |
caaaggttaacatataaatatattccaattccaataccaaatccttcaacaggctgcaaaaattgtgccaatgtagcacctgatgtgtttgcaatggagg |
110 |
Q |
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| T |
35224808 |
caaaggttaacatataaatatattccaattccaataccaaatccttcaacaggctgcaaaaattgtgccaatgtagcacctgatgtgtttgcaatggagg |
35224709 |
T |
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| Q |
111 |
aagattttggaagagccagagtattcagccagcgagggaaccctgagttagttcaacaggcaattgacagttggtatgtctatactatatgcatcccttt |
210 |
Q |
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| T |
35224708 |
aagattttggaagagccagagtattcagccagcgagggaaccctgagttagttcaacaggcaattgacagttggtatgtctatactatacgcatcacttt |
35224609 |
T |
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| Q |
211 |
agtcacctgtatttatcagtcatttctattattg |
244 |
Q |
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| T |
35224608 |
agtcacctgtatttatcagtcatttctgttattg |
35224575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 277 - 404
Target Start/End: Complemental strand, 35224582 - 35224454
Alignment:
| Q |
277 |
tgttattgcttgtgaagccaactaagctaatgatgattaatggaattaatttaacnnnnnnn-ttccagccctgttgactgcattcattggacatctgct |
375 |
Q |
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| T |
35224582 |
tgttattgcttgtgaagccaactaagctaatgatgattaatggaattaatttaacgaaaaaaattccagccctgttgactgcattcattggacatctgct |
35224483 |
T |
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| Q |
376 |
gcacagctatcattactcgaagatgaaat |
404 |
Q |
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| T |
35224482 |
gcacagctatcattactcgaagatgaaat |
35224454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 31171568 - 31171437
Alignment:
| Q |
58 |
aacaggctgcaaaaattgtgccaatgtagcacctgatgtgtttgcaatggaggaagattttggaagagccagagtattcagccagcgagggaaccctgag |
157 |
Q |
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| T |
31171568 |
aacaggctgcaaaaactgtgccaatgttgcctgtgatgtgtttggaattgaagaagactttggaagagccagagtatacaatcagtttgggaaccctgaa |
31171469 |
T |
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| Q |
158 |
ttagttcaacaggcaattgacagttggtatgt |
189 |
Q |
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| T |
31171468 |
ttaattcaaacggctattgaaagttggtatgt |
31171437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 343 - 404
Target Start/End: Complemental strand, 31171135 - 31171074
Alignment:
| Q |
343 |
agccctgttgactgcattcattggacatctgctgcacagctatcattactcgaagatgaaat |
404 |
Q |
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| T |
31171135 |
agccctgttgactgcattcattggacatcagctgcacaactatcattacttgaagacgaaat |
31171074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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