View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_26 (Length: 414)
Name: NF21279_high_26
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 28289018 - 28288624
Alignment:
| Q |
7 |
gattatactagaatgagggaacttttcttgagaagaatgatgcctttgaggcatgtgattatgacacctccttaattttaagtttggctttggaaaataa |
106 |
Q |
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| T |
28289018 |
gattatactagaatgagggaacttttcttgagaagaatggtgcctttgaggcatgtgattatgacacct---taatttta-gtttggctttggaaaataa |
28288923 |
T |
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| Q |
107 |
tgattccctgagactagcacaaattatatcccctttattcttcagacatcctctacgcagcaagaaattgctacattct------tgaagacaacaattt |
200 |
Q |
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| T |
28288922 |
tgattcc-tgagactagcacaaactatatcccctttattcttcagacatc-tctacgcagtaagaaattgctacattctgtgaattgaagacaacaattt |
28288825 |
T |
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| Q |
201 |
ttaacaccaagttcataactctatcagttacaaattagcctatggactgggttggataaatatcaaaacttgaagatactcacgttaaacaaggatactt |
300 |
Q |
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| T |
28288824 |
ttaacaccaagttcataactct--cagttacaaattagcctatggactgggttggataaatatcaaaacttgaagatactcatgttaaacaaggatactt |
28288727 |
T |
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| Q |
301 |
gaactggtggagcttttgtagactcaacttgcaaactctagtttatcaaatatnnnnnnnnnntattattggaaaaatttatggtttccaaatagaatat |
400 |
Q |
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| T |
28288726 |
gaactggtggagcttttgtagactcaacttgcaaactctagtttatcaaatataaaaaaaaaatattatcggaaaaatttatggtttccaaatagaatat |
28288627 |
T |
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