View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21279_high_32 (Length: 337)
Name: NF21279_high_32
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_32 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 24564329 - 24564010
Alignment:
| Q |
18 |
ctttctaaactgcaatgatcatttcatgtcttaatcacattgannnnnnnngttgtaacaaagtcacgttgaagtaatttactattgctttcagaaataa |
117 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24564329 |
ctttctaaactgcaacgatcatttcatgtcttaatcacattgattttttt-gttgtaacaaagtcacgttgaagtaatttactattgctttcagaaataa |
24564231 |
T |
|
| Q |
118 |
aactttcttttgtccactacctaaattttaccccacttcatgttcatatattgccttctctttggtttcttgctttgcaatagagcgattggaagatggt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24564230 |
aactttcttttgtccactacctaaattttaccccacttcatgttcatatattgccttctctttggtttcttgctttgcaatagagcgattggaagatgat |
24564131 |
T |
|
| Q |
218 |
gaaaatgatttttaacggtgatcacacataaatgatggtgagatacatcttacttccttta-nnnnnnnnnnnnnnaaagtgaaaaaatgatgtaattta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
24564130 |
gaaaatgatttttaacggtgatcacacataaatgatgatgagatacatcttacttcctttattttttcctttttttaaagtgaaaaaatgatgtaattta |
24564031 |
T |
|
| Q |
317 |
tattgggtttcaatcttttat |
337 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
24564030 |
tattgggtttcaatcttttat |
24564010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 9799190 - 9798992
Alignment:
| Q |
70 |
ttgtaacaaagtcacgttgaagtaatttactattgctttcagaaataaaactttcttttgtccactacctaaattttacccc--acttcatgttcatata |
167 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| |||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
9799190 |
ttgtaacaaagtcacgttgatttaatttactgttgctttcagaaataaatctttctttcatccagtagctacattttacccccggcttcatgttcatatg |
9799091 |
T |
|
| Q |
168 |
ttgccttctctttggtttcttgctttgcaata-gagcgattggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacat |
265 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
9799090 |
ttgctttctctttggtatcttgctttgcaatatgagcgaccggaagatggtgaaaaggatctttaacggtaatcacacataaatgatggtaagatacat |
9798992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 293 - 335
Target Start/End: Complemental strand, 9798958 - 9798916
Alignment:
| Q |
293 |
aaagtgaaaaaatgatgtaatttatattgggtttcaatctttt |
335 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9798958 |
aaagtgaaaaaataatgtaatttatattgggtttcaatctttt |
9798916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 45535134 - 45535313
Alignment:
| Q |
18 |
ctttctaaactgcaatgatcatttcatgtcttaatcacattgannnnnnnn-gttgtaacaaagtcacgttgaagtaatttactattgctttcagaaata |
116 |
Q |
| |
|
|||||| |||||||||||||||| ||| |||||||| |||||| |||||||||||||||| |||| ||||| |||||| ||||||||| || |
|
|
| T |
45535134 |
ctttctcaactgcaatgatcattacatctcttaatcgcattgatttttttttgttgtaacaaagtcacattgatttaattaactattactttcagaatta |
45535233 |
T |
|
| Q |
117 |
aaactttcttttgtccactacctaaattttaccccacttcatgttcatatattgccttctctttggtttcttgctttgca |
196 |
Q |
| |
|
|||||||||||| |||| || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45535234 |
aaactttcttttatccattagctacattttaccccgcttcatgttcatatattgccttctctttggtttcttgctttgca |
45535313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 44338315 - 44338195
Alignment:
| Q |
75 |
acaaagtcacgttgaagtaatttactattgctttcagaaataaaactttcttttgtccactacctaaattttaccccacttcatgttcatatattgcctt |
174 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||||| |||| || | |||||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
44338315 |
acaaagtcacgttgatttaatttattattgctttcagaaataaaactttattttatcaattacctactttttaccctacttcatgttc--atattgcctt |
44338218 |
T |
|
| Q |
175 |
ctctttggtttcttgctttgcaa |
197 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
44338217 |
ctctttgatttcttgctttgcaa |
44338195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 45535593 - 45535665
Alignment:
| Q |
201 |
agcgattggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacatcttacttcc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
45535593 |
agcgattggaagatggtgaaaatgatttttaac-gtgaacacacataaatgatggtgagatacgtcttacttcc |
45535665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 44337971 - 44337903
Alignment:
| Q |
199 |
agagcgattggaagatggtgaaaatgatttttaacggtgatcacacataaatgatggtgagatacatct |
267 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
44337971 |
agagcaattggaagatggtgaaaatgatttctaacgatgatcatacataaattatggtgagatacatct |
44337903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 44337876 - 44337835
Alignment:
| Q |
296 |
gtgaaaaaatgatgtaatttatattgggtttcaatcttttat |
337 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44337876 |
gtgaaaaaatgatgtaatttatattggtattcaatcttttat |
44337835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University