View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21279_high_38 (Length: 238)

Name: NF21279_high_38
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21279_high_38
NF21279_high_38
[»] chr2 (4 HSPs)
chr2 (1-223)||(44222838-44223060)
chr2 (1-223)||(44233660-44233882)
chr2 (2-223)||(44210638-44210859)
chr2 (145-218)||(43457013-43457086)
[»] chr4 (3 HSPs)
chr4 (4-221)||(2887280-2887497)
chr4 (4-221)||(2896857-2897074)
chr4 (14-221)||(2877767-2877974)
[»] chr7 (10 HSPs)
chr7 (5-219)||(39574412-39574626)
chr7 (82-221)||(39547165-39547304)
chr7 (10-221)||(39537700-39537911)
chr7 (82-221)||(39339017-39339156)
chr7 (80-194)||(39366438-39366552)
chr7 (5-219)||(39588880-39589094)
chr7 (82-221)||(1084502-1084641)
chr7 (94-221)||(39353872-39353999)
chr7 (80-221)||(39563796-39563937)
chr7 (5-53)||(39366363-39366411)
[»] chr8 (1 HSPs)
chr8 (100-223)||(4501655-4501778)
[»] chr1 (2 HSPs)
chr1 (106-221)||(2160310-2160425)
chr1 (11-221)||(2148482-2148692)
[»] chr3 (2 HSPs)
chr3 (73-221)||(49773508-49773656)
chr3 (115-223)||(25522906-25523014)


Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44223060 - 44222838
Alignment:
Q  1 tacaaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44223060 tacaaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctct 44222961  T
Q  101 caactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44222960 caactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagc 44222861  T
Q  201 ggctgcaattgttatgagaactg 223  Q
    |||||||||||||||| ||||||    
T  44222860 ggctgcaattgttatgcgaactg 44222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44233882 - 44233660
Alignment:
Q  1 tacaaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctct 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  44233882 tacaaatggttgcagatgtttattgacgaagtcatggatctagtggagctgaactcattgaggaactctctagttggtttgcctggtgtgagtggtctct 44233783  T
Q  101 caactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagc 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44233782 caactgaacagcgcaagagactgactattgcagttgaacttgtggctaatccatctataatttttatggatgagcctacttctggtttagatgctagagc 44233683  T
Q  201 ggctgcaattgttatgagaactg 223  Q
     ||||||||||||||||||||||    
T  44233682 tgctgcaattgttatgagaactg 44233660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 44210859 - 44210638
Alignment:
Q  2 acaaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctc 101  Q
    ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||| |||||||||||    
T  44210859 acaaatgcttgcagatgtttattgaggaagtaatggatcttgtggagctgaactcgttgagggactccctcgttggtttgcctggtgttagtggtctctc 44210760  T
Q  102 aactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcg 201  Q
    ||| ||||| || || ||  ||||||||||||| ||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||||||||||     
T  44210759 aacggaacaacgtaaaaggttgactattgcagttgaactagtggctaatccgtccataattttcatggatgaaccaacttctggtttagatgctagagct 44210660  T
Q  202 gctgcaattgttatgagaactg 223  Q
    ||||||||||||||||||||||    
T  44210659 gctgcaattgttatgagaactg 44210638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 218
Target Start/End: Complemental strand, 43457086 - 43457013
Alignment:
Q  145 gctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgttatgag 218  Q
    |||||||| || || |||||||||||||| || ||||| ||| | ||||| ||||| || ||||||||||||||    
T  43457086 gctaatccttcaatcattttcatggatgaaccaacttcaggtcttgatgcaagagctgcagcaattgttatgag 43457013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 2887280 - 2887497
Alignment:
Q  4 aaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaa 103  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||| | ||||| |||||| | ||||||||||||||||||| |||||| ||||    
T  2887280 aaatggttgtagatgttcattgaggaagtcatggaactagtggagctcaacccattgagaaactctttggttggtttgcctggtgtgaatggtctttcaa 2887379  T
Q  104 ctgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggc 203  Q
    | ||||| |||||||| || ||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||    
T  2887380 ccgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggattagatgctagagctgc 2887479  T
Q  204 tgcaattgttatgagaac 221  Q
    ||||||||||||| ||||    
T  2887480 tgcaattgttatgcgaac 2887497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 2897074 - 2896857
Alignment:
Q  4 aaatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaa 103  Q
    ||||||||| ||||||| || || ||||||||||| ||||||||||| ||  | ||||| |||||| | ||||||||||||||||||| ||| || ||||    
T  2897074 aaatggttgtagatgttcatcgaggaagtcatggaactagtggagctcaatccattgagaaactctttggttggtttgcctggtgtgaatggcctttcaa 2896975  T
Q  104 ctgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggc 203  Q
    ||||||| |||||||| || ||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||    
T  2896974 ctgaacaacgcaagaggctaactattgcagttgaattagtggccaatccatccataattttcatggatgagcctacatctggattagatgctagagctgc 2896875  T
Q  204 tgcaattgttatgagaac 221  Q
    ||||||||||||| ||||    
T  2896874 tgcaattgttatgcgaac 2896857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 2877767 - 2877974
Alignment:
Q  14 agatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaacagcg 113  Q
    ||||||| ||||| ||||| ||||| ||||| ||||||||  || |||||||||| ||||||||||||||||||||||| ||||| ||||| ||||| ||    
T  2877767 agatgttcattgaggaagttatggaactagtcgagctgaatccgctgaggaactcactagttggtttgcctggtgtgagcggtctttcaaccgaacaacg 2877866  T
Q  114 caagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgtt 213  Q
    ||||||  | |||||| |||| ||| | ||||| |||||||| |||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||    
T  2877867 caagaggttaactatttcagttgaattagtggccaatccatccataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgtt 2877966  T
Q  214 atgagaac 221  Q
    ||| ||||    
T  2877967 atgcgaac 2877974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 39574626 - 39574412
Alignment:
Q  5 aatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaac 104  Q
    ||||||| ||||||||| |||| ||||||||||| ||||||||| ||||| | |||||| |  |    |||||| | || ||| | |  ||||| |||||    
T  39574626 aatggttacagatgtttgttgaggaagtcatggagctagtggagttgaacccattgagggatgcatatgttggtctcccaggtattaacggtctatcaac 39574527  T
Q  105 tgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggct 204  Q
    ||| ||||| || ||| ||||||||||||| ||||| |||  |||||| ||||| || |||||||||||||| |||||||| |||||||| ||||| ||     
T  39574526 tgagcagcgtaaaagattgactattgcagttgaactggtgtgtaatccttctatcatattcatggatgagccaacttctgggttagatgcaagagctgca 39574427  T
Q  205 gcaattgttatgaga 219  Q
    || ||||||||||||    
T  39574426 gctattgttatgaga 39574412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 39547304 - 39547165
Alignment:
Q  82 cctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctactt 181  Q
    |||||||| || ||||||||||| || |||||||| || |||||||||||||| ||  | || |||||||| |||||||| |||||||||||||| ||||    
T  39547304 cctggtgttagcggtctctcaacggagcagcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaactt 39547205  T
Q  182 ctggtttagatgctagagcggctgcaattgttatgagaac 221  Q
    ||||  | ||||| ||||| || || ||||||||||||||    
T  39547204 ctggacttgatgcaagagctgcagctattgttatgagaac 39547165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 39537911 - 39537700
Alignment:
Q  10 ttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaac 109  Q
    ||||||||||| ||||| ||||||||||| || ||||| |||||  |  || ||||| |  |||| ||  | |||||||| ||  |||||||||| || |    
T  39537911 ttgcagatgttcattgaagaagtcatggaacttgtggaactgaaaccactgcggaacgcattagtaggactacctggtgttagcagtctctcaacggagc 39537812  T
Q  110 agcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaat 209  Q
    ||||||| || |||||||||||||| ||  | || |||||||| |||||||| |||||||||||||| ||||||||  | ||||| || || || || ||    
T  39537811 agcgcaaaaggctgactattgcagttgagttggttgctaatccttctataatattcatggatgagccaacttctggacttgatgcaagggctgcagctat 39537712  T
Q  210 tgttatgagaac 221  Q
    ||||||||||||    
T  39537711 tgttatgagaac 39537700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 39339017 - 39339156
Alignment:
Q  82 cctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctactt 181  Q
    |||||||| || ||||||||||| || |||||||| || |||||| ||||||| ||  | || |||||||| || ||||| |||||||||||||| ||||    
T  39339017 cctggtgttagcggtctctcaacggagcagcgcaaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgagccaactt 39339116  T
Q  182 ctggtttagatgctagagcggctgcaattgttatgagaac 221  Q
    ||||  ||||||| || || || || ||||||||||||||    
T  39339117 ctgggctagatgcaagggctgcagctattgttatgagaac 39339156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 194
Target Start/End: Original strand, 39366438 - 39366552
Alignment:
Q  80 tgcctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctac 179  Q
    |||||||||| ||||||||||| || || |||||||| || || ||| ||||||| ||| | || |||||||| || ||||| |||||||||||||| ||    
T  39366438 tgcctggtgttagtggtctctcgacagagcagcgcaaaaggctaactgttgcagttgaattggtagctaatccttcaataatattcatggatgagccaac 39366537  T
Q  180 ttctggtttagatgc 194  Q
    ||||||  |||||||    
T  39366538 ttctgggctagatgc 39366552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 219
Target Start/End: Complemental strand, 39589094 - 39588880
Alignment:
Q  5 aatggttgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaac 104  Q
    |||||||||||||||| ||||| ||||||||||| || |||||||| ||| || | ||| |  |  | || || ||||| || || |||||||| || ||    
T  39589094 aatggttgcagatgttcattgaggaagtcatggagcttgtggagctaaacccgcttagggatgcaattgtcggattgccaggggttagtggtctatcgac 39588995  T
Q  105 tgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggct 204  Q
     || || ||||| ||  ||||  ||||||| ||  | ||||||||||| |||||||| |||||||||||||| ||||| ||  ||||||| || || ||     
T  39588994 ggagcaacgcaaaaggttgacagttgcagttgagttagtggctaatccttctataatattcatggatgagccaacttcggggctagatgcaagggctgca 39588895  T
Q  205 gcaattgttatgaga 219  Q
     | ||||||||||||    
T  39588894 tctattgttatgaga 39588880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 1084641 - 1084502
Alignment:
Q  82 cctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctactt 181  Q
    |||||||| ||  |||||||||| ||  ||| ||| || |||||||||||||| ||  | ||  ||||||| |||||||| || ||||||||||| ||||    
T  1084641 cctggtgttagcagtctctcaacagagtagcacaaaaggctgactattgcagttgagttggtttctaatccttctataatatttatggatgagccaactt 1084542  T
Q  182 ctggtttagatgctagagcggctgcaattgttatgagaac 221  Q
    ||||  ||||||| |  || || || ||||||||||||||    
T  1084541 ctgggctagatgcaatggcagcagcgattgttatgagaac 1084502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 221
Target Start/End: Original strand, 39353872 - 39353999
Alignment:
Q  94 ggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatg 193  Q
    ||||||||||  || |||||||| || |||||| ||||||| ||  | || |||||||| || ||||| ||||||||||| || ||||||||  ||||||    
T  39353872 ggtctctcaatggagcagcgcaaaaggctgactgttgcagttgagttggttgctaatccttcaataatattcatggatgaaccaacttctgggctagatg 39353971  T
Q  194 ctagagcggctgcaattgttatgagaac 221  Q
    | || || || ||| |||| ||||||||    
T  39353972 caagggctgcagcagttgtgatgagaac 39353999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 221
Target Start/End: Complemental strand, 39563937 - 39563796
Alignment:
Q  80 tgcctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctac 179  Q
    |||||||||| | ||||||||| || || ||||||||  |  |||| |||||||| ||  | || |||||||| || ||||| ||||||||||| || ||    
T  39563937 tgcctggtgttaatggtctctcgacggagcagcgcaaacggttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaac 39563838  T
Q  180 ttctggtttagatgctagagcggctgcaattgttatgagaac 221  Q
    ||||||  ||||||| || || || || ||||| ||||||||    
T  39563837 ttctgggctagatgcaagggctgcagctattgtgatgagaac 39563796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39366363 - 39366411
Alignment:
Q  5 aatggttgcagatgtttattgatgaagtcatggatctagtggagctgaa 53  Q
    |||| ||||||||||||||||| ||||||||||| || ||||| |||||    
T  39366363 aatgcttgcagatgtttattgaggaagtcatggaacttgtggaactgaa 39366411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 223
Target Start/End: Original strand, 4501655 - 4501778
Alignment:
Q  100 tcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagag 199  Q
    |||||||||||  | ||||| ||||| ||||| ||||| ||||| |||||||| || || || |||||||||||||| ||||||||| ||||||| ||||    
T  4501655 tcaactgaacaaagaaagaggctgacaattgcggtcgagcttgttgctaatccttcaatcatattcatggatgagccaacttctggtctagatgcaagag 4501754  T
Q  200 cggctgcaattgttatgagaactg 223  Q
    | ||||| ||||||||||| ||||    
T  4501755 cagctgctattgttatgaggactg 4501778  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 106 - 221
Target Start/End: Complemental strand, 2160425 - 2160310
Alignment:
Q  106 gaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctg 205  Q
    ||||| ||||||||||| || || ||||| |||||||| || |||||||| ||||| |||||||||||||| || |||||  | ||||||||||| ||||    
T  2160425 gaacaacgcaagagactaacgatcgcagttgaacttgtagcgaatccatcgataatattcatggatgagccaacctctggccttgatgctagagcagctg 2160326  T
Q  206 caattgttatgagaac 221  Q
    ||||||| ||||||||    
T  2160325 caattgtaatgagaac 2160310  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 2148692 - 2148482
Alignment:
Q  11 tgcagatgtttattgatgaagtcatggatctagtggagctgaactcgttgaggaactctctagttggtttgcctggtgtgagtggtctctcaactgaaca 110  Q
    |||||||||||||||| ||||| ||||| || || ||||| ||||| || ||  |  | || ||||| ||||| || |  | ||| || ||||| |||||    
T  2148692 tgcagatgtttattgaggaagttatggagcttgtagagcttaactcattaagagaagcacttgttggattgccaggcgaaaatggactttcaaccgaaca 2148593  T
Q  111 gcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaatt 210  Q
    |||||||||||| ||||||||||| |||||||| || |||||||| ||||| ||||||||||| || || |||||  | |||||| |||| ||||| |||    
T  2148592 gcgcaagagacttactattgcagttgaacttgtagcgaatccatcgataatattcatggatgaaccaacctctggcctggatgctcgagcagctgcgatt 2148493  T
Q  211 gttatgagaac 221  Q
    || ||| ||||    
T  2148492 gtaatgcgaac 2148482  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 221
Target Start/End: Original strand, 49773508 - 49773656
Alignment:
Q  73 gttggtttgcctggtgtgagtggtctctcaactgaacagcgcaagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatg 172  Q
    ||||| || |||||||||| |||||| || || ||||||||||||||  | || |||||||| |||||||| || ||||||||||| || ||||||||||    
T  49773508 gttggattacctggtgtgaatggtctgtccacagaacagcgcaagaggttaacgattgcagttgaacttgttgccaatccatctattatattcatggatg 49773607  T
Q  173 agcctacttctggtttagatgctagagcggctgcaattgttatgagaac 221  Q
    | ||||| |||||  | ||||| ||||| ||||| || || ||||||||    
T  49773608 aacctacctctggccttgatgcaagagctgctgctatagtaatgagaac 49773656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 25523014 - 25522906
Alignment:
Q  115 aagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgtta 214  Q
    |||||| |||| || ||||| |||||||| || || || |||||||| ||||||||||| ||||| || ||  | |||||  | || ||||| |||||||    
T  25523014 aagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgtta 25522915  T
Q  215 tgagaactg 223  Q
    |||||||||    
T  25522914 tgagaactg 25522906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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