View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21279_high_42 (Length: 229)
Name: NF21279_high_42
Description: NF21279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21279_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 3014934 - 3015131
Alignment:
| Q |
19 |
cataggtcctatacataagaaggatgtggagaaggcca----------gtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgc |
108 |
Q |
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| T |
3014934 |
cataggtcctatacataagaaggatgtggagaaggccagtgcaagccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgc |
3015033 |
T |
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| Q |
109 |
cagagtcactcctgaagcttggcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggt |
206 |
Q |
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| T |
3015034 |
cagagtcacccctgaagcttggcaacttgcacataaattgggtgtcaaaatatttatctccgataaaatgcatcatctatttgatcaatttaataggt |
3015131 |
T |
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Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 40671853 - 40671669
Alignment:
| Q |
19 |
cataggtcctatacataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcact |
118 |
Q |
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| T |
40671853 |
cataggtcctgttcataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgttgtgttggcgtttcctgccatggtcacc |
40671754 |
T |
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| Q |
119 |
cctgaagcttggcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaaga |
203 |
Q |
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| T |
40671753 |
cctggagcttggcaacttgcacacaaattgggtgtcaaaattttcatctccgataaaatgcatcatctatttgatcgatttaaga |
40671669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 44607525 - 44607708
Alignment:
| Q |
19 |
cataggtcctatacataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcact |
118 |
Q |
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| T |
44607525 |
cataggccctgtacataagaaggatgtgatgaaggccagtgtaatgcttgaaaagaaacgagaatattctactatattggcgtttgatgtcaaagtcacc |
44607624 |
T |
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| Q |
119 |
cctgaagcttggcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaag |
202 |
Q |
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| T |
44607625 |
tctgaagctaaggaacttgcagataaattgggtgtgaaaatttttattgccgatattatttatcatctatttgatcaatttaag |
44607708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 202
Target Start/End: Original strand, 44629042 - 44629214
Alignment:
| Q |
30 |
tacataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcactcctgaagcttg |
129 |
Q |
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| T |
44629042 |
tacataagaaggatgtgatgaaggccagtgtgatgcttgaaaagaaacgagaatatgctactatattggcatttgatgtcaaagtcacccctgaagctag |
44629141 |
T |
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| Q |
130 |
gcaacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaag |
202 |
Q |
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| T |
44629142 |
ggatcttgcagaggaattgggtgtgaagatttttatagccgatatcatttatcatctatttgatcaatttaag |
44629214 |
T |
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